CB291327

Overview
NameCB291327
Unique NameCB291327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291327 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.037e-17
Identity = 48/94 (51.06%), Postives = 57/94 (60.64%), Query Frame = -3
Query:  310 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMPGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 591
            MARSF+N K+ SALVADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CB291327 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = -3
Query:  304 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMPGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 591
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E  G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of CB291327 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 40/100 (40.00%), Postives = 52/100 (52.00%), Query Frame = -3
Query:  304 MARSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMPGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 591
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A +   SSE      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
The following BLAST results are available for this feature:
BLAST of CB291327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARG2_PHAAU3.037e-1751.06Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI2.252e-1245.83Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.907e-1140.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_02ch06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ch06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291327 ID=CB291327; Name=CB291327; organism=Citrus sinensis; type=EST; length=749bp
TTTTTTTTTTTTTTTTTGAAAATAATAAATCATCTTTATTTCCGACCATT
GGCAACAAAAAAACGGGAATGTTACATGCAATACAACATCTAGTTTGGAT
CCCCAAGTCAAAACAGAGAGAACAGGGGAGCTGCAGCTGCTACGCCAATT
TCCCGGAATTCCTCGAGAGCTCATGCGGCTGACCACATCAGAACAAATCC
CTTTTTAACCTTTTTTTAATTTTTCTTTCGTCCTTCCTCAGTTTCCATGT
CCGAATTAATATATATTAATAATAATACTTATTAATTTTGATGATCAGTT
GGTGTGCTTCAAGAACATGGCTCTGAGGTCGGCCCCATCGAGCTCGTTGG
CGAGATTCTCCGGCCTGTAAACACCAGTGACTGGGTCTGGGACCCACGAG
ACCTTCTCACTGGATCCTGGCATCTCTTCTGCTGGTTTCTTCAACATCGC
AGCAGCACTCCTAGCTCCCCCTGTTGCCCGCGACACAGCGCCTTGTGATG
CCGCCGAGTATCCTCTTTTGTAGATGGCGTTAGAGATTCCGTCAGCGACG
AGAGCAGAGAAAAGCTTAGCGTTTGAGAAAGAGCGAGCCATTTTTCTTAG
TTATGTGGGATGATGATGATGATAAGAGATCTTAACGCTGCTGCAGAAAG
CAATTTCCTTCTTTTCTTTCTATCGAAAAGCCTTCAGCAGCAGCTAAAGA
AACTTCCCTCTTCGGAGCGCGAAAATCCCCTCAAAGTGTTTGCCTCGTG
back to top