CB291512

Overview
NameCB291512
Unique NameCB291512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291512 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.942e-88
Identity = 153/182 (84.07%), Postives = 169/182 (92.86%), Query Frame = -3
Query:  269 QNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKRQRSGRGS 814
            Q + DVPSYVMLGI + EEAP TPQ PLSP+G+ACSRMDLTAIHQILVMTHY+DDEGTNELSFQEWTQQM+DML+ARKRGD +FREK+FKTA+DCYSQFIDVGTMVSPTV+ RRSLC+L+CDQPDAALRDAMQAQCVYPDW TAFYMQ+VALAKL+M+ DAADML EAA LEEKRQR GRGS
Sbjct:  331 QTKSDVPSYVMLGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEGTNELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKRQRGGRGS 512          
BLAST of CB291512 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.713e-49
Identity = 93/175 (53.14%), Postives = 130/175 (74.29%), Query Frame = -3
Query:  290 QNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 814
            Q R + PSY ++ +   E+   +  + LSP+G+AC RMDL +IH ILV+  Y DD+   ELSF+EW Q+++++ + R+ GD AF E++FKTA+ CYSQF++  ++V P+VYARRSL +L CD+P+ AL D M AQ V+PDW TAFY+Q+VALAKLDM+ D+AD LKEAA LE K+
Sbjct:  292 QTRTEAPSYEVVEMTNQEKDASSSSN-LSPLGEACLRMDLASIHSILVLAGYDDDKDIIELSFEEWIQEVKELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKEAALLEVKK 465          
BLAST of CB291512 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.505e-44
Identity = 93/172 (54.07%), Postives = 118/172 (68.60%), Query Frame = -3
Query:  290 DVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEG-TNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 802
            ++ S+ +LG+P            LSP+G+AC R DLTAIH+I+    YKDDEG T ELSFQ WT QM+D L  +K+GD AFR K+F  A++CYSQFI+VGTM SPTV+AR+SLC+LM D P  AL +AMQAQ + P W  A Y+QAVAL+ L    +A   LK+ A LE KR
Sbjct:  318 EIASHQLLGVPNSATTTA-----LSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKDGAMLESKR 484          
The following BLAST results are available for this feature:
BLAST of CB291512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4523_ARATH4.942e-8884.07Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH7.713e-4953.14Probable inactive receptor-like kinase SSP OS=Arab... [more]
Y5126_ARATH1.505e-4454.07Probable serine/threonine-protein kinase At5g41260... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_03ab10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03ab10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291512 ID=CB291512; Name=CB291512; organism=Citrus sinensis; type=EST; length=816bp
TTTTTTTTTTTTTTTTTAATCATCTGTGTAACTTTTACGTCCCTAACTGA
CAGTGTACATATTGACTGATTAATCATTTGCCCTAAATTATTAAAAAGAA
AAAAATAGCACAACAGACAAGTACAGAACAAGTCTGTCCTCCCTCTATGG
TACATTTTGGAAGAAAACCATATTCCTAATTTCAAATTACATAAAGCCCA
AATGCTTTCTTACAACCACCACAACAATTGATTGAACACAGGCTACAAAA
GAATATTACAGCTTCTCAAGAACCTCTCCCACTCCGTTGCCTTTTTTCTT
CTAATGAGGCAGCCTCCTTTAACATATCAGCTGCATCCTTGTGCATGTCC
AACTTCGCAAGGGCAACAGCCTGCATGTAAAATGCTGTGGACCAGTCGGG
ATAAACACATTGTGCTTGCATTGCATCTCTAAGTGCAGCATCTGGCTGGT
CACACATTAAATGACAAAGACTTCTCCGTGCATAGACAGTTGGTGAAACC
ATGGTTCCCACGTCTATAAACTGAGAATAGCAATCTACGGCAGTTTTAAA
TTCTTTCTCTCGGAATGCCACATCCCCACGCTTTCTAGCCTCCAACATAT
CTCTCATTTGTTGGGTCCACTCTTGAAAAGACAACTCATTGGTTCCTTCA
TCATCTTTGTAGTGTGTCATCACCAAAATCTGGTGGATGGCTGTGAGGTC
CATCCGTGAACAAGCATCACCCATTGGAGAAAGAGGGTGCTGTGGAGTAG
GAGGTGCTTCCTCATGCCTTGGAATTCCCAGCATCACATAAGAAGGAACA
TCAGGTCTATTTTGTA
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