CB291607

Overview
NameCB291607
Unique NameCB291607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB291607 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.651e-17
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = -3 
Query:  507 DYTVQDQNELTSMETE---IETFLSSPVDNESSSDIDNPNAGSVPAPSGGNFSSVNETIWEDFMADDLIAGD--PEEVVVKDQSEAEVELEDLVATPTDWGEELQDLVDQMGYL 833
            D  +   + L   E E   IE   S+ +DNESSS++      SV   +G +   V + IWE+ +++DLI+GD   EEVVV +Q E +VE+EDLV    +WGEELQDLVDQ+G+L
Sbjct:  241 DQPMNYSSSLQESEAELASIEMLFSAAMDNESSSNV---RPDSVVTANGTDMEPVADDIWEELLSEDLISGDRAAEEVVVVEQPEFDVEVEDLVVKTPEWGEELQDLVDQLGFL 351
The following BLAST results are available for this feature:
BLAST of CB291607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HSF30_SOLPE3.651e-1744.74Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_03ag08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03ag08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291607 ID=CB291607; Name=CB291607; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTAAATTGTGGAATTTCTCATTAATCCCAACGATGAAT
TCAGCTATAGTAAAATCAAATTAGTCTGCACCACCCCTTTGGTATTTACA
TATCTGTAATCTGACAGCTGATATAAACACAAGAACAAATATAATGGACA
AGAAACTGCAAAAGTCCAGAGTGCAAGCAGATTAGGCAGCTGAACTTTGA
GCATATCTCTGAAATCAATCACGGGTTGAAACTCCTCCTTTCTTTTGGAG
TCCGCCTGCAACATGTGGCAAGAAAATATAAAACATTAAAGTGGTGCAAA
GGATCAAAAAGGGAAACACTAGACATTACAAACAAAAAATCGAGACTCTA
TTATCACTTAAGGATACAGTAGAACAGGAACAAATATCGTTGGCCTCTTT
GCAACTTCGCGACTTCCAGCACTACAGAAACAGGAATGAAGTTGCAGAGA
CCAACTCAGCCTAGGGAAGTCTTTCAACAATTCTGTGCAGCAATAGTTTG
TCACCTGAGATAACCCATCTGATCTACTAGGTCTTGCAATTCCTCACCCC
AATCTGTAGGTGTTGCAACCAAATCCTCCAATTCCACCTCAGCCTCTGAC
TGATCCTTCACCACCACTTCTTCCGGATCGCCGGCAATCAGATCGTCAGC
CATAAAATCCTCCCATATTGTCTCATTGACACTACTGAAATTGCCACCAC
TTGGGGCAGGTACTGAACCAGCATTTGGGTTGTCGATATCACTGCTTGAT
TCGTTGTCCACCGGCGAAGAAAGAAACGTCTCTATCTCAGTTTCCATGGA
GGTCAATTCATTTTGATCTTGGACTGTGTAATCTACAA
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