CB292626

Overview
NameCB292626
Unique NameCB292626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292626 vs. ExPASy Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.795e-47
Identity = 99/221 (44.80%), Postives = 135/221 (61.09%), Query Frame = 1
Query:   82 ISILVGTQTEEIKKDMDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDDQGFDLISLAWSNLRLETELDADKTEDSGLLKVLPPMTDHCMVKGGTKLLILGGHSKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVDVTQTPPAPRYDHSAALHANRYL 744
            IS   G   E   KD+ S   +    Y+ W     SG RP  RY+H AAV   K+YI GG+ NGR+L D    DL S  WS  R+ET++ A +++++    +L P   H ++    KLL +GGH+K  S+SM V+  D  T    +++T GK PV+RGG SVT+VG  L+IFGG+D  R LLND+H LDL+TMTWD +D     P+PR DH+AA+HA R+L
Sbjct:  142 ISTENGRLAETQDKDVVSEDSNTVSVYNQWTAPQTSGQRPKARYEHGAAVIQDKMYIYGGNHNGRYLGDLHVLDLKSWTWS--RVETKV-ATESQETSTPTLLAPCAGHSLIAWDNKLLSIGGHTKDPSESMQVKVFDPHTITWSMLKTYGKPPVSRGGQSVTMVGKTLVIFGGQDAKRSLLNDLHILDLDTMTWDEIDAVGVSPSPRSDHAAAVHAERFL 359          
BLAST of CB292626 vs. ExPASy Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.893e-44
Identity = 95/216 (43.98%), Postives = 126/216 (58.33%), Query Frame = 1
Query:   97 GTQTEEIKKDMDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDDQGFDLISLAWSNLRLETELDADKTEDSGLLKVLPPMTDHCMVKGGTKLLILGGHSKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVDVTQTPPAPRYDHSAALHANRYL 744
            G  TE   KD+          Y+ W     SG  P  RY+H AAV   K+Y+ GG+ NGR+L D    DL +  WS  R+ET++     E S   K L     H ++    +LL +GGH+K  S+SM V   DL      +++T GK P++RGG SVTLVG  L+IFGG+D  R LLND+H LDL+TMTW+ +D   +PP PR DH+AA+HA RYL
Sbjct:  148 GRLTETQDKDVVLEDPDTVSVYNQWTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWS--RVETKVVTGSQETSSPAK-LTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSILKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPTPRSDHAAAVHAERYL 360          
BLAST of CB292626 vs. ExPASy Swiss-Prot
Match: RNGB_DICDI (RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.022e-13
Identity = 66/241 (27.39%), Postives = 99/241 (41.08%), Query Frame = 1
Query:   55 TGESAPSDPISILVGTQTEEIKKDMDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQK---------LYIVGGSRNGRFLSDDQGFDLISLAWSNLRLETELDADKTEDSGLLKVLPPMTDHCMVKGGTKLLILGGHSK-KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVDVTQTPPAPRYDHSAALHANRYL 744
            TG + P+    I+ G  +     D+     +  +  + W  +   G  PS RY H+A ++  +         +   GG    +  SD      I++ + N           T      K +     H  V     L++ GGH+  KS     V    LE+N        G +P AR  HS   V + ++ IFGG D  +K  ND+++LDLET  W  V+   TPP PR  HSA +  N  L
Sbjct:   21 TGTTLPNGSGFIVFGGNSNRAFNDIQ----YYNIFNNSWSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQIIFFGGRATSKPFSD------INILYVNSNRSFIWKQVTT------KSIEGRAGHTAVVYRQNLVVFGGHNNHKSKYYNSVLLFSLESNEWRQQVCGGVIPSARATHSTFQVNNNKMFIFGGYD-GKKYYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKL 244          
BLAST of CB292626 vs. ExPASy Swiss-Prot
Match: AFK_PHYPO (Actin-fragmin kinase OS=Physarum polycephalum PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.641e-13
Identity = 50/181 (27.62%), Postives = 76/181 (41.99%), Query Frame = 1
Query:  169 WVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDDQGFDLISLAWSNLRLETELDADKTEDSGLLKVLPPMTDHCMVKGGTKLLILGGHSKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVDVTQTPPAPR 705
            W+ + V   +P+PR  H+  +++ KLY+ GG       +D   FD     WS +  + E  +             P   H     G K+ I GGH+        +   D   +    +E +  G  P  R  HS TLVG+ L IFGG +   K  NDV+    +   W+ ++ T   P PR
Sbjct:  407 WLKVVVPNEKPAPRRYHSGVLYEGKLYVFGGVCIKTASNDFYVFDFAKKKWSIVVAQGEAPS-------------PRCGHSATVYGGKMWIFGGHNNNKQPYSDLYTFDFAKSTWEKIEPTKDGPWPSPRYHHSATLVGASLYIFGGAEHKSKYHNDVYVYKFDANQWELLNATGETPEPR 574          
BLAST of CB292626 vs. ExPASy Swiss-Prot
Match: KLDC3_HUMAN (Kelch domain-containing protein 3 OS=Homo sapiens GN=KLHDC3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12
Identity = 56/180 (31.11%), Postives = 80/180 (44.44%), Query Frame = 1
Query:  208 RYKHAAAVFDQKLYIVGGSRNGRFLS-----DDQGFDLISLAWSNLRLETELDADKTEDSGLLKVLPPMT-DHCMVKGGTKLLILGGHSKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVDVTQTPPAPRYDHSAAL 726
            R  HAA     ++Y  GG  +G         D   F+ +SL W      T+L   K+   G   V+P M   H  V     +L+ GG +       ++   D+ T+       SG VP AR GHS  ++G  + IFGG E ++    ND+H LD  TMTW  +    +P   R  HSA +
Sbjct:   14 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW------TKLPPVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFHSATM 187          
BLAST of CB292626 vs. ExPASy Swiss-Prot
Match: RABEK_MOUSE (Rab9 effector protein with kelch motifs OS=Mus musculus GN=Rabepk PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.980e-12
Identity = 54/192 (28.12%), Postives = 85/192 (44.27%), Query Frame = 1
Query:  169 WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDDQGFDLISLAWSNLRLETELDADKTEDSGLLKVLPPMTDHCMVKGGTKLLILGGHSKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVDVTQTPPAPRYDH 714
            W TL   G RP PR  H+ + F         K++IVGG+   +  SD    DL +  W     E  L   + E +  L   P  + H        + + GG + +S +   ++ +  E       E +G  P  R  H S   +G++L +FGG +R  + + DV  H  D  T+TW   +   +PP+PR+ H
Sbjct:   26 WYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDLGTHQWDTATREGLLP--RYEHASFL---PSCSPH-------SIWVFGG-ADQSGNRNCLQVMSPEDRTWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPETHGSPPSPRHGH 204          
BLAST of CB292626 vs. ExPASy Swiss-Prot
Match: RABEK_BOVIN (Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.980e-12
Identity = 60/192 (31.25%), Postives = 81/192 (42.19%), Query Frame = 1
Query:  169 WVTLPVSGARPSPRYKH--AAAVFDQKLYIVGGSRNGRFLSDDQ--GFDLISLAWSNLRLETELDADKTEDSGLLKVLPPMTDHCMVKGGTKLLILGGHSKKSSDSMI--VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVDVTQTPPAPRYDHSAAL 726
            W T  V+G  PSPR  H  +AA+ DQ     GG R  + + D Q   FD  +L WS           + E  G  K   P   H MV  GTKL I GG    + D+    +  ID+       +  +G  P     HS   VG  L +FGG   +   LN ++   +E   W  +    +PP  R DHS  +
Sbjct:  126 WTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWS-----------QPETHG--KPPSPRHGHVMVAAGTKLFIHGG---LAGDNFYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVFGGMTPT-GALNTMYQYHIEKQHWTLLKFENSPPTGRLDHSMCI 300          
BLAST of CB292626 vs. ExPASy Swiss-Prot
Match: KLDC3_RAT (Kelch domain-containing protein 3 OS=Rattus norvegicus GN=Klhdc3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.504e-12
Identity = 56/183 (30.60%), Postives = 77/183 (42.08%), Query Frame = 1
Query:  208 RYKHAAAVFDQKLYIVGGSRNGRFLS-----DDQGFDLISLAWSNLRLETELDADKTEDSGLLKVLPPMT-DHCMVKGGTKLLILGGHSKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVDVTQTPPAPRYDHSAALHAN 735
            R  HAA     ++Y  GG  +G         D   F+ +SL W      T+L   +    G   V+P M   H  V     + + GG +       ++   D+ T+       SG VP AR GHS  ++G  + IFGG E  +    ND+H LD  TMTW  V     P   R  HSA +  N
Sbjct:   14 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW------TKLPPVRPAVRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGTVPGARDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWRDFHSATMLGN 190          
BLAST of CB292626 vs. ExPASy Swiss-Prot
Match: KLDC3_MOUSE (Kelch domain-containing protein 3 OS=Mus musculus GN=Klhdc3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.504e-12
Identity = 56/183 (30.60%), Postives = 77/183 (42.08%), Query Frame = 1
Query:  208 RYKHAAAVFDQKLYIVGGSRNGRFLS-----DDQGFDLISLAWSNLRLETELDADKTEDSGLLKVLPPMT-DHCMVKGGTKLLILGGHSKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVDVTQTPPAPRYDHSAALHAN 735
            R  HAA     ++Y  GG  +G         D   F+ +SL W      T+L   +    G   V+P M   H  V     + + GG +       ++   D+ T+       SG VP AR GHS  ++G  + IFGG E  +    ND+H LD  TMTW  V     P   R  HSA +  N
Sbjct:   14 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW------TKLPPVRPAVRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGTVPGARDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWRDFHSATMLGN 190          
BLAST of CB292626 vs. ExPASy Swiss-Prot
Match: KLDC3_BOVIN (Kelch domain-containing protein 3 OS=Bos taurus GN=KLHDC3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 54/180 (30.00%), Postives = 76/180 (42.22%), Query Frame = 1
Query:  208 RYKHAAAVFDQKLYIVGGSRNGRFLS-----DDQGFDLISLAWSNLRLETELDADKTEDSGLLKVLPPMT-DHCMVKGGTKLLILGGHSKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVDVTQTPPAPRYDHSAAL 726
            R  HAA     ++Y  GG  +G         D   F+ +SL W      T+L   +    G   V+P M   H  V     + + GG +       ++   D+ T+       SG VP AR GHS  ++G  + IFGG E  +    ND+H LD  TMTW  +     P   R  HSA +
Sbjct:   14 RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW------TKLPPVRPAARGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATM 187          
The following BLAST results are available for this feature:
BLAST of CB292626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ACBP4_ARATH2.795e-4744.80Acyl-CoA-binding domain-containing protein 4 OS=Ar... [more]
ACBP5_ARATH2.893e-4443.98Acyl-CoA-binding domain-containing protein 5 OS=Ar... [more]
RNGB_DICDI2.022e-1327.39RING finger protein B OS=Dictyostelium discoideum ... [more]
AFK_PHYPO2.641e-1327.62Actin-fragmin kinase OS=Physarum polycephalum PE=1... [more]
KLDC3_HUMAN1.311e-1231.11Kelch domain-containing protein 3 OS=Homo sapiens ... [more]
RABEK_MOUSE4.980e-1228.13Rab9 effector protein with kelch motifs OS=Mus mus... [more]
RABEK_BOVIN4.980e-1231.25Rab9 effector protein with kelch motifs OS=Bos tau... [more]
KLDC3_RAT6.504e-1230.60Kelch domain-containing protein 3 OS=Rattus norveg... [more]
KLDC3_MOUSE6.504e-1230.60Kelch domain-containing protein 3 OS=Mus musculus ... [more]
KLDC3_BOVIN8.495e-1230.00Kelch domain-containing protein 3 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_04dc03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292626 ID=CB292626; Name=CB292626; organism=Citrus sinensis; type=EST; length=745bp
GCCCCTTGACGGAGATCTCAAAGGCAAAAGGCTGGTGTTACGCTTTTTCG
TCTCACCGGAGAATCAGCACCGTCAGATCCAATCTCAATTTTAGTTGGCA
CACAAACAGAGGAGATTAAGAAAGATATGGACAGCGGTAGTTGGCATTTG
GAATTACCTTATGACCTATGGGTGACACTCCCTGTTTCTGGTGCACGACC
ATCTCCCCGATACAAGCATGCTGCTGCGGTGTTCGATCAGAAACTATACA
TTGTTGGAGGGAGTCGTAATGGTCGGTTCTTGTCTGATGATCAGGGTTTT
GATCTTATAAGTTTGGCATGGTCCAATCTAAGACTCGAAACGGAACTAGA
TGCTGATAAGACTGAGGACAGTGGACTACTCAAAGTTCTTCCACCCATGA
CAGATCACTGTATGGTCAAGGGGGGAACCAAACTCTTAATCCTTGGTGGG
CATTCCAAGAAATCTTCTGATAGCATGATAGTGCGTTTCATTGATCTTGA
AACAAACCTCTGTGGTGTCATGGAGACCTCGGGAAAAGTTCCGGTAGCCC
GTGGCGGGCATTCTGTTACTTTGGTTGGTTCCAGGTTGATCATTTTTGGT
GGAGAAGACAGGAGCAGGAAATTGCTGAATGATGTCCATTTTCTTGATCT
GGAGACTATGACTTGGGATGCAGTTGACGTTACGCAGACGCCCCCAGCTC
CAAGATATGATCACTCTGCTGCACTCCATGCAAATCGATACCTTA
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