CB292645

Overview
NameCB292645
Unique NameCB292645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB292645 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 2.712e-88
Identity = 155/173 (89.60%), Postives = 164/173 (94.80%), Query Frame = -2 
Query:  266 INISGINGEVIPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSLDPKPIQGDWNGAGAPANYSPKSMRNDGGFEVIKKAIEKLGLRHSEPIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDPEKEGKGYFEDRRPAFNMDPYVVPSMIAETTILWKP 784
            INISGINGEV+PGQWEFQVGP+VGISAGD++W ARYILERITEIAGVVLSLDPKPIQGDWNGAGA  NYS KSMRN+GG+E+IKKAIEKLGLRH E IAAYGEGNERRLTG+HETADINTFKWGVANRGASIRVGRD EKEGKGYFEDRRPA NMDPYVV SMIAETT+LWKP
Sbjct:  184 INISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CB292645 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.541e-88
Identity = 156/173 (90.17%), Postives = 163/173 (94.22%), Query Frame = -2 
Query:  266 INISGINGEVIPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSLDPKPIQGDWNGAGAPANYSPKSMRNDGGFEVIKKAIEKLGLRHSEPIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDPEKEGKGYFEDRRPAFNMDPYVVPSMIAETTILWKP 784
            INISGINGEV+PGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVV+S DPKPIQGDWNGAGA  NYS KSMRNDGG+E+IKKAIEKLGLRH E IAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRD EKEGKGYFEDRRPA NMDPYVV SMIAE+TILWKP
Sbjct:  184 INISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356
[Close]
BLAST of CB292645 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.030e-87
Identity = 156/173 (90.17%), Postives = 162/173 (93.64%), Query Frame = -2 
Query:  266 INISGINGEVIPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSLDPKPIQGDWNGAGAPANYSPKSMRNDGGFEVIKKAIEKLGLRHSEPIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDPEKEGKGYFEDRRPAFNMDPYVVPSMIAETTILWKP 784
            INISGINGEV+PGQWE+QVGP+VGISAGD+LWV+RYILERITEIAGVVLS DPKPIQGDWNGAGA  NYS KSMRNDGGFEVIKKAIEKLGLRH E IAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRD EK GKGYFEDRRPA NMDPYVV SMIAETTILWKP
Sbjct:  184 INISGINGEVMPGQWEYQVGPSVGISAGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
[Close]
BLAST of CB292645 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 4.329e-86
Identity = 151/173 (87.28%), Postives = 162/173 (93.64%), Query Frame = -2 
Query:  266 INISGINGEVIPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSLDPKPIQGDWNGAGAPANYSPKSMRNDGGFEVIKKAIEKLGLRHSEPIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDPEKEGKGYFEDRRPAFNMDPYVVPSMIAETTILWKP 784
            +NISGINGEV+PGQWEFQVGP+VGISAGD++WVARYILERITEIAGVVLS DPKPI+GDWNGAGA  NYS K+MR DGG+EVIKKAI+KLGLRH E IAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRD EKEGKGYFEDRRPA NMDPYVV SMIA+TTILWKP
Sbjct:  184 VNISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CB292645 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 5.654e-86
Identity = 153/173 (88.44%), Postives = 160/173 (92.49%), Query Frame = -2 
Query:  266 INISGINGEVIPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSLDPKPIQGDWNGAGAPANYSPKSMRNDGGFEVIKKAIEKLGLRHSEPIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDPEKEGKGYFEDRRPAFNMDPYVVPSMIAETTILWKP 784
            INISGINGEV+PGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVVLS DPKPI+GDWNGAGA  NYS K+MRNDGG+EVIK AIEKLG RH E IAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRD EK GKGYFEDRRPA NMDPYVV SMIA+TTILWKP
Sbjct:  184 INISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CB292645 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.806e-85
Identity = 148/173 (85.55%), Postives = 159/173 (91.91%), Query Frame = -2 
Query:  266 INISGINGEVIPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSLDPKPIQGDWNGAGAPANYSPKSMRNDGGFEVIKKAIEKLGLRHSEPIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDPEKEGKGYFEDRRPAFNMDPYVVPSMIAETTILWKP 784
            INISGINGEV+PGQWEFQVGP+VGISAGD++W ARYILERITEIAGVV+S DPKPI GDWNGAGA  NYS KSMR DGG+E+IKKAIEKLGLRH E IAAYGEGNERRLTGKHET DINTF WGVANRGAS+RVGRD EK+GKGYFEDRRP+ NMDPYVV SMIAETT+LWKP
Sbjct:  184 INISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CB292645 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 8.164e-85
Identity = 150/173 (86.71%), Postives = 159/173 (91.91%), Query Frame = -2 
Query:  266 INISGINGEVIPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSLDPKPIQGDWNGAGAPANYSPKSMRNDGGFEVIKKAIEKLGLRHSEPIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDPEKEGKGYFEDRRPAFNMDPYVVPSMIAETTILWKP 784
            INISGINGEV+PGQWEFQVGPAVGISAGD+LWVARYILERITE+AGVVLS DPKPI+GDWNGAGA  NYS K+MRNDGG+E IK AI+KLG RH E IAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRD EK GKGYFEDRRPA NMDPYVV SMIA+TTILWKP
Sbjct:  184 INISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEEIKSAIQKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of CB292645 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 1.066e-84
Identity = 152/173 (87.86%), Postives = 158/173 (91.33%), Query Frame = -2 
Query:  266 INISGINGEVIPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSLDPKPIQGDWNGAGAPANYSPKSMRNDGGFEVIKKAIEKLGLRHSEPIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDPEKEGKGYFEDRRPAFNMDPYVVPSMIAETTILWKP 784
            INISGINGEV+PGQWEFQVGP+VGISA D+LWVARYILERITEIAGVVLS DPKPIQGDWNGAGA  NYS KSMRNDGG+EVIKKAI KL  RH E IAAYGEGNERRLTGKHETAD+NTF WGVANRGASIRVGRD EK GKGYFEDRRPA NMDPYVV SMIAETT+LWKP
Sbjct:  184 INISGINGEVMPGQWEFQVGPSVGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAITKLEKRHKEHIAAYGEGNERRLTGKHETADMNTFIWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of CB292645 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.393e-84
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = -2 
Query:  266 INISGINGEVIPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSLDPKPIQGDWNGAGAPANYSPKSMRNDGGFEVIKKAIEKLGLRHSEPIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDPEKEGKGYFEDRRPAFNMDPYVVPSMIAETTILWKP 784
            INISGINGEV+PGQWEFQVGP++GISA D+LWVARYILERITEIAGVVLS DPKPIQGDWNGAGA  NYS KSMRNDGG+EVIKKAI KL  RH E IAAYGEGNERRLTG+HETAD+NTF WGVANRGASIRVGRD EK GKGYFEDRRPA NMDPYVV SMIAETTILWKP
Sbjct:  184 INISGINGEVMPGQWEFQVGPSIGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIAKLEKRHKEHIAAYGEGNERRLTGRHETADMNTFVWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
[Close]
BLAST of CB292645 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.819e-84
Identity = 149/173 (86.13%), Postives = 158/173 (91.33%), Query Frame = -2 
Query:  266 INISGINGEVIPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSLDPKPIQGDWNGAGAPANYSPKSMRNDGGFEVIKKAIEKLGLRHSEPIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDPEKEGKGYFEDRRPAFNMDPYVVPSMIAETTILWKP 784
            INISGINGEV+PGQWEFQVGPAVGISA D++WVARYILERITEIAGVV+S DPKPI GDWNGAGA  NYS KSMR +GG+E+IKKAI+KLGLRH E IAAYGEGNERRLTG HETADINTF WGVANRGASIRVGRD EKEGKGYFEDRRPA NMDPY+V SMIAETTILW P
Sbjct:  184 INISGINGEVMPGQWEFQVGPAVGISAADEIWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHCNYSTKSMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356
The following BLAST results are available for this feature:
BLAST of CB292645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA1_ALNGL2.712e-8889.60Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA2_VITVI3.541e-8890.17Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_VITVI1.030e-8790.17Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_LOTJA4.329e-8687.28Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_VIGAC5.654e-8688.44Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA3_MEDSA2.806e-8585.55Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA1_PHAVU8.164e-8586.71Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA3_PHAVU1.066e-8487.86Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA2_SOYBN1.393e-8487.28Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLN11_ARATH1.819e-8486.13Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_04dd02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04dd02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292645 ID=CB292645; Name=CB292645; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTGAACAAACGGAATTGACCCTTCCATAATGGTAT
TAAATTAAATGGTTACCTTATTCAACCCAATATGACAGCAGGAAGCAAAA
AACCCCCTGTTGCAAATACAGGGGCAAAAATTGAAACAAGACAAAAGCTG
AACTACTACTAATAAAGCATCCTTAGCAAAACACAATTCTGTCGTGAACT
CGTGAATCCTGAGTAAAGCCAGCAAATCAAACAAAATATTTCAAAGGGTG
CTAAAGGAGCATTCATGGCTTCCACAAAATAGTGGTTTCTGCAATCATGG
AGGGGACAACATATGGATCCATGTTAAAAGCAGGTCTCCTGTCCTCAAAG
TAACCCTTTCCTTCTTTCTCTGGGTCTCGTCCAACACGGATTGATGCCCC
ACGGTTAGCAACACCCCATTTGAAAGTGTTGATGTCAGCTGTTTCATGTT
TGCCAGTGAGTCGGCGTTCATTGCCTTCACCATATGCGGCAATGGGCTCA
CTGTGCCTCAGTCCAAGTTTCTCAATTGCTTTCTTAATAACCTCAAAGCC
TCCATCGTTCCTCATCGACTTGGGGCTGTAATTTGCGGGAGCACCAGCTC
CATTCCAGTCACCCTGAATTGGCTTGGGATCCAAAGAAAGCACAACTCCA
GCAATCTCTGTAATCCTCTCTAAAATATAGCGGGCAACCCACAACTGATC
TCCAGCAGAAATTCCAACAGCGGGACCAACTTGGAACTCCCACTGCCCCG
GGATGACTTCTCCATTGATGCCACTGATGTTGATT
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