CB292745

Overview
NameCB292745
Unique NameCB292745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292745 vs. ExPASy Swiss-Prot
Match: CTNS_ARATH (Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.126e-55
Identity = 107/174 (61.49%), Postives = 129/174 (74.14%), Query Frame = -1
Query:  260 AFSMHAVLLTIITLFQIAIYERGVQKVFKISMAIVSVVWLAAAVCFLVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 781
            AFS+HAV++T +TLFQI IYERG QKV ++++ IV VVW  AA+CF +ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKT            F+ QHYVLYP KK   S +  ++   EPL+ SS
Sbjct:   94 AFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPETGEESN-EPLIDSS 266          
BLAST of CB292745 vs. ExPASy Swiss-Prot
Match: CTNS_DICDI (Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.976e-28
Identity = 61/156 (39.10%), Postives = 95/156 (60.90%), Query Frame = -1
Query:  317 AFSMHAVLLTIITLFQIAIYERGVQKVFKISMAIVSVVWLAAAVCFLVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKA 781
            AF++H  +LT IT+ Q  IY+RG QK  K+ + I +++W++  V  ++   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+S+ N+LLDF GG  +  QM +   D  +W  F G+  K             FI QHY+LY   K+
Sbjct:   87 AFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPKS 242          
BLAST of CB292745 vs. ExPASy Swiss-Prot
Match: CTNS_HUMAN (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.101e-24
Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = -1
Query:  332 FSMHAVLLTIITLFQIAIYERGVQKVFKISMAIVSVVWLAAAVCFLVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLY 778
            FS+HAV+LT+I + Q  +YERG Q+V   ++  + + WL A V  +VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K             F  QH+ LY
Sbjct:  208 FSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357          
BLAST of CB292745 vs. ExPASy Swiss-Prot
Match: CTNS_BOVIN (Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.101e-24
Identity = 58/153 (37.91%), Postives = 90/153 (58.82%), Query Frame = -1
Query:  323 FSMHAVLLTIITLFQIAIYERGVQKVFKISMAIVSVVWLAAAVCFLVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAK 778
            FS+HAV LT++ + Q  +YERG Q+V  ++++ + + WL   +  ++A    + WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN+LLDF GG  +  QM +QS + + W   +G+  K             F  QH+ LY  K
Sbjct:  208 FSLHAVALTLVVIVQCLLYERGSQRVSWLAISFLVLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKK 360          
BLAST of CB292745 vs. ExPASy Swiss-Prot
Match: CTNS_MOUSE (Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.743e-24
Identity = 63/153 (41.18%), Postives = 87/153 (56.86%), Query Frame = -1
Query:  323 FSMHAVLLTIITLFQIAIYERGVQKVFKISMAIVSVVWLAAAVCFLVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAK 778
            FS+HAV LT+I + Q  +YERG Q+V   S+  + + WL   V  +VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG +LLDF GG  +  QM +QS + + W   +G+  K             F  QH+ LY  K
Sbjct:  208 FSLHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360          
BLAST of CB292745 vs. ExPASy Swiss-Prot
Match: CTNS_DROME (Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.778e-23
Identity = 65/179 (36.31%), Postives = 98/179 (54.75%), Query Frame = -1
Query:  251 FSMHAVLLTIITLFQIAIYERGVQKVFKISMAIVSVVWLAAAVCFLVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHP 778
            FS+HA+  T IT+ Q   Y+R  Q+V  I+  I+++   A  V     L   S   WL  + + + +++ +T+IKY+PQA+MN+RRKST G+SIGNILLDF GG  +  QMI+ + + + WV+ +G+  K             F+ QHYV Y   +   SS L+    V+     S  P
Sbjct:  213 FSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FAVVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSSSDLTTVTDVQNRTNESPPP 389          
BLAST of CB292745 vs. ExPASy Swiss-Prot
Match: CTNS_CAEEL (Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.099e-20
Identity = 59/152 (38.82%), Postives = 82/152 (53.95%), Query Frame = -1
Query:  329 FSMHAVLLTIITLFQIAIYERGVQKVFKISMAIVSVVWLAAAVCFLVA--LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYP 778
            F++HA L   IT+ Q   YER  Q V    +A++ +V ++   C   A  L     L  +   + I++ +T  KY PQA  N+ RKST G+SIGNI+LDF GG  +  QMI+Q+++ N W  FY N  K             F+ QHYVLYP
Sbjct:  210 FAVHAFLACFITILQCLFYERDNQSVSSKCIALM-IVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 360          
BLAST of CB292745 vs. ExPASy Swiss-Prot
Match: CTNS_CAEBR (Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.993e-20
Identity = 59/182 (32.42%), Postives = 94/182 (51.65%), Query Frame = -1
Query:  239 FSMHAVLLTIITLFQIAIYERGVQKVF-KISMAIVSVVWLAAAVCFLVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXFICQHYVLYPAKKAVISSKLSKDG-GVEPLLKSSDHPESEN 778
            F++HA L   +T+ Q   YER  Q++  K  + I+ +V        +  L   + L  +   + I++ +T  KY PQA  N++RKST G+SIGNILLDF GG  +  QM++Q+I+ N W  FY N  K             F+ QHY LYP  +   +     D    + +++ ++H  ++N
Sbjct:  209 FAVHAFLACFVTILQCIFYERDQQRISTKCIILIIGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAEVPHNEYHGVDNPDPDSIVRDAEHGAADN 390          
The following BLAST results are available for this feature:
BLAST of CB292745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CTNS_ARATH5.126e-5561.49Cystinosin homolog OS=Arabidopsis thaliana GN=At5g... [more]
CTNS_DICDI6.976e-2839.10Cystinosin homolog OS=Dictyostelium discoideum GN=... [more]
CTNS_HUMAN2.101e-2440.67Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2[more]
CTNS_BOVIN2.101e-2437.91Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1[more]
CTNS_MOUSE2.743e-2441.18Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1[more]
CTNS_DROME1.778e-2336.31Cystinosin homolog OS=Drosophila melanogaster GN=C... [more]
CTNS_CAEEL4.099e-2038.82Cystinosin homolog OS=Caenorhabditis elegans GN=ct... [more]
CTNS_CAEBR6.993e-2032.42Cystinosin homolog OS=Caenorhabditis briggsae GN=c... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05aa01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05aa01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292745 ID=CB292745; Name=CB292745; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTTAAACTAGTATATGGTTTAAAATTACCATCTAAA
ACCAATTACAGGAATCATATTTGATAGTAATTCCTAATTCCAGAACATGA
CTGTTTCTTCCTATACACAAGTAAGAAAATCATACAAATTGCTGATGTGG
TGTGCCTGCAGCAACAATATGGTTTGATTTCTATGTGGTGTAAATAGATT
GCGTCCTCACAAATTGTGTTGGCATTTCACCTTTATACATTTTCTGACTC
TGGGTGATCAGAAGACTTAAGAAGTGGCTCTACACCACCATCTTTGCTAA
GTTTAGAAGAGATTACCGCTTTCTTGGCAGGATATAGCACATAATGCTGA
CATATGAAAAGAAGATCAAAGACTACGGATACCAGAGATAGCAATGTCTT
CCCTATATTTCCATAAAAGTTAACCCAAGAATTTTGATCAATAGACTGAA
CAATCATCTGTGAGTAATTAGTACACCCTCCAAGAAAATCAAGTAATATA
TTTCCAATGCTGAAACCATCTGTACTCTTTCGCCTAAAGTTCATGATGGC
CTGTGGAATATACTTGATGAGTGTCATAATAACTTGAATAGCGTTAAAGA
AGTTGATGAGCCAAAGCCAAGAATGGTTTGGCAATGCTACCAAGAAACAA
ACTGCGGCAGCCAACCAAACAACAGAGACAATTGCCATAGAAATCTTAAA
TACCTTCTGAACACCACGTTCATAGATTGCAATTTGGAACAGGGTAATTA
TTGTCAAGAGAACAGCATGCATTGAAAACGC
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