CB292818

Overview
NameCB292818
Unique NameCB292818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292818 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 4.526e-15
Identity = 52/166 (31.33%), Postives = 81/166 (48.80%), Query Frame = -1
Query:  303 EAQHLMSGLDWPGAVKDIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQVKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 794
            + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  +++AP+  HF ELD  +     +          A+   YE +IYPG  H F N   D   R        +D +A +LAW R   W  +YLS
Sbjct:  129 KGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHN---DSTPR--------YDKSAADLAWQRTLKWFDKYLS 278          
BLAST of CB292818 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.720e-14
Identity = 61/191 (31.94%), Postives = 88/191 (46.07%), Query Frame = -1
Query:  303 FKALIPDLYRGKVGLDTAEAQHLMSGL-----DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQVKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 848
            F A  PD Y GK   +  +A  LM+ +     D   A+    ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D   +K P+     E D FV   +V            +GV  +V +Y G  HAF+N          E   D +DP   + AW+   ++   YL+
Sbjct:   56 FVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEV---IDIAKKVWKNGVDVKVKVYSGVTHAFLN----------EKREDVYDPCRAQDAWNLTVAFFKEYLT 231          
BLAST of CB292818 vs. ExPASy Swiss-Prot
Match: DLHH_AQUAE (Putative carboxymethylenebutenolidase OS=Aquifex aeolicus GN=aq_1997 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 56/188 (29.79%), Postives = 83/188 (44.15%), Query Frame = -1
Query:  306 FKALIPDLYRGKVGLDTAEAQHLMSGL---DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQVKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYL 848
            F A  PD Y+G+   +  +A  LM+ +         +   ASV ++K       KKVG+TG+C GG LA+  +   PE VDA + FYG+P     +   +K P+     E D FV   +V            +GV  +V ++ G  HAF+N          E   D +DP     AW    ++   YL
Sbjct:   56 FVAFAPDFYKGQYADNPDDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEMVDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEV---IDIAKTVWKNGVDVQVKVFSGVTHAFLN----------EKREDVYDPKRACEAWELAVNFFKTYL 230          
The following BLAST results are available for this feature:
BLAST of CB292818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YGHX_ECOLI4.526e-1531.33Putative uncharacterized protein yghX OS=Escherich... [more]
USF_AQUPY1.720e-1431.94Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
DLHH_AQUAE6.118e-1229.79Putative carboxymethylenebutenolidase OS=Aquifex a... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05ad09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ad09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292818 ID=CB292818; Name=CB292818; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTTTTTTTTTTTGGTCCAGAGAAGAAACCTTCTCTGCCCTTTAGG
GTTAATCCAACCGGGTAGGTCCCCATTAACACCCCTTGGGAAGTTCACCT
TTGTGATAATCAATAAGCCTTCAGCAAACATACAATATAGGCAAACTACA
AACAGACCTATCCCAGTATCGAACCCCTTTGGAAACAAAAGGATACTTGC
AGCTGTGTTATATGTAGAGTAGAGGCATACACACGGTTATTTATTTAATG
ATGGAAGCGAGGTAAACACCATAGATTCATAATACTAGTGAATTACTTAA
GCAGATAAGTAGCGGGTCATCCATGATTGGAAGCGAGACCACGCCAGCTC
AACTGCGGCTGGATCGTGATCATCCATTCCCATTTCTTTCCTCCTCTTCA
CTCCATCCGGAGAAATGTTCATGAAAGCATGTGCACTGCCAGGATAAATA
TGTACCTCATATGGAACACCAGATGCTTTCAGCTTTTCCTCCAATGCTTT
GGCAGTTTTCACATCTGAAAAGCCAACAAAATTGTCAAGCTCCCCAAAAT
GAGCTTGAACAGGTGCCTTAACCTGGGTAGGATCGGCGAGCTCAGGTGGG
GGAACCCCATAAAATGAAACAACAGCATCAACCTCAGGAACTAAGACAGA
ACTTGCAATAGCGAGAGCACCTCCCATGCAATATCCAGTCACGCCAACCT
TCTTGGAACCATTTGCCTTAAGCCAATTAACTGAAGCGTGGATATCCTTG
ACAGCACCTGGCCAATCAAGACCACTCATCAAGTGCTGTGCTTCAGCAGT
ATCCAAACCAACCTTTCCCCGATATAAATCTGGTATAAGTGCCTTGAA
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