CB292824

Overview
NameCB292824
Unique NameCB292824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292824 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.524e-79
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = -2
Query:  413 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALAGTYVGGVHPELIL 856
            IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNAL GTYVGGVHPELIL
Sbjct:  198 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of CB292824 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.967e-74
Identity = 137/148 (92.57%), Postives = 143/148 (96.62%), Query Frame = -2
Query:  413 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALAGTYVGGVHPELIL 856
            IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNAL G+YVGG+HPELIL
Sbjct:  194 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of CB292824 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.488e-69
Identity = 129/148 (87.16%), Postives = 137/148 (92.57%), Query Frame = -2
Query:  413 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALAGTYVGGVHPELIL 856
            IVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+ GT VG + PEL+L
Sbjct:  191 IVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of CB292824 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.593e-68
Identity = 128/148 (86.49%), Postives = 137/148 (92.57%), Query Frame = -2
Query:  413 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALAGTYVGGVHPELIL 856
            IV+GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+ GT    +  EL++
Sbjct:  197 IVRGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of CB292824 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.156e-66
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = -2
Query:  446 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALAGT 856
            IV+ GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+ GT
Sbjct:  194 IVRRGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of CB292824 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.866e-41
Identity = 82/124 (66.13%), Postives = 101/124 (81.45%), Query Frame = -2
Query:  479 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 850
            +G R+ GVVTNW LVSM+HD QSCMDPN + A +V+S+ GHD P GA  VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  190 EGVRISGVVTNWTLVSMHHDDQSCMDPNTINAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CB292824 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.089e-40
Identity = 81/124 (65.32%), Postives = 100/124 (80.65%), Query Frame = -2
Query:  479 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 850
            +G R+ GVVTNW LVSM+HD QSCMDPN + A +++S+ GHDGP GA  VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  186 EGVRIAGVVTNWTLVSMHHDDQSCMDPNTINAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CB292824 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.060e-38
Identity = 74/121 (61.16%), Postives = 96/121 (79.34%), Query Frame = -2
Query:  479 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 841
            ++ GVV NW LV+++HD  SCMDPN + A V++S+ GHDGPFGA   KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  196 QIAGVVVNWTLVTLHHDDHSCMDPNTINAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CB292824 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 5.060e-38
Identity = 84/144 (58.33%), Postives = 99/144 (68.75%), Query Frame = -2
Query:  440 IVKGG-----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALAGTYV 856
            IVK G     R+ GVVTNW LVS+NH  QSCMDPN + A +VVS+ GHDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A+   Y+
Sbjct:  185 IVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCMDPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
BLAST of CB292824 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.923e-37
Identity = 76/135 (56.30%), Postives = 98/135 (72.59%), Query Frame = -2
Query:  437 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALAGTYVG 841
            R+ G VTNW LVS+NHD QSCMDP+ + A +V S  GHDGPFGA  VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +     G  VG
Sbjct:  201 RIAGCVTNWTLVSLNHDHQSCMDPSTITAPLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
The following BLAST results are available for this feature:
BLAST of CB292824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
THI4_CITSI4.524e-7999.32Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.967e-7492.57Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH2.488e-6987.16Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE3.593e-6886.49Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.156e-6691.24Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH2.866e-4166.13Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX1.089e-4065.32Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR5.060e-3861.16Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI2_SCHPO5.060e-3858.33Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_UROFA1.923e-3756.30Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ae01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ae01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292824 ID=CB292824; Name=CB292824; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTTTTTTTTTTTGATCTTAATCACATCAGCACTTTCCCATTGGCT
GATGCCTCAAGTTATAAACATACAAAGCAAAGAAAAGGGAACAGCCCAAG
GGCAGTCTTACACATAACACAGATAACAAGGACTAGATACGCAACTGCAA
ATTCACCTCCGAAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAAT
TAAAATTAAAGGTTCCATGATGGACCGGAAACAAACACTTTATTCACAAA
ACCTCACAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACC
TAAATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGAT
GAGTGATGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAAA
ATCAGCTGCAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTAC
CGGCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCC
TTCTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGC
ACCATCAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAA
CCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGT
GCCTTCATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTT
TACTCCAGTGGCCCCAAAAGGCCCATCATGGCCACAAGAGCTCACAACCA
CCTTCGCTTCCATTACATTGGGATCCATGCAAGACTGTGTATCGTGATTC
ATTGACACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGCCTTT
GACTATC
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