CB292825

Overview
NameCB292825
Unique NameCB292825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.243e-74
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 2
Query:   44 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 454
            TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMI+TGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL
Sbjct:  209 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.019e-69
Identity = 126/137 (91.97%), Postives = 133/137 (97.08%), Query Frame = 2
Query:   44 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 454
            TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMI+TGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELIL
Sbjct:  205 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.024e-64
Identity = 119/137 (86.86%), Postives = 128/137 (93.43%), Query Frame = 2
Query:   44 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 454
            TNWALV+ NH TQSCMDPNVMEAK+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMI+TGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  202 TNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.295e-63
Identity = 118/137 (86.13%), Postives = 127/137 (92.70%), Query Frame = 2
Query:   44 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 454
            TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMI+TGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  208 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.252e-62
Identity = 116/126 (92.06%), Postives = 122/126 (96.83%), Query Frame = 2
Query:   44 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 421
            TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMI+TGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  205 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.809e-38
Identity = 76/115 (66.09%), Postives = 94/115 (81.74%), Query Frame = 2
Query:   44 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 388
            TNW LVSM+HD QSCMDPN + A +V+S+ GHD P GA  VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+I+ GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  199 TNWTLVSMHHDDQSCMDPNTINAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.067e-37
Identity = 75/115 (65.22%), Postives = 93/115 (80.87%), Query Frame = 2
Query:   44 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 388
            TNW LVSM+HD QSCMDPN + A +++S+ GHDGP GA  VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+I+ GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  195 TNWTLVSMHHDDQSCMDPNTINAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.434e-36
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 2
Query:   47 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 388
            NW LV+++HD  SCMDPN + A V++S+ GHDGPFGA   KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+II GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  203 NWTLVTLHHDDHSCMDPNTINAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.650e-36
Identity = 72/129 (55.81%), Postives = 95/129 (73.64%), Query Frame = 2
Query:   44 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 430
            TNW LVS+NHD QSCMDP+ + A +V S  GHDGPFGA  VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+I+ GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  207 TNWTLVSLNHDHQSCMDPSTITAPLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.991e-36
Identity = 75/128 (58.59%), Postives = 91/128 (71.09%), Query Frame = 2
Query:   44 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 427
            TNW LVS+NH  QSCMDPN + A +VVS+ GHDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMI+ GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  201 TNWTLVSLNHGLQSCMDPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of CB292825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
THI4_CITSI9.243e-7499.27Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL4.019e-6991.97Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH1.024e-6486.86Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE3.295e-6386.13Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.252e-6292.06Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH2.809e-3866.09Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX1.067e-3765.22Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR3.434e-3663.16Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA7.650e-3655.81Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO9.991e-3658.59Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ae01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ae01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292825 ID=CB292825; Name=CB292825; organism=Citrus sinensis; type=EST; length=705bp
GCACCTTGTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCAACT
GGGCGTTGGTGTCAATGAATCACGATACACAGTCTTGCATGGATCCCAAT
GTAATGGAAGCGAAGGTGGTTGTGAGCTCTTGTGGCCATGATGGGCCTTT
TGGGGCCACTGGAGTAAAGAGGTTGAAGAGTATCGGAATGATTGAGGAAG
TGCCTGGAATGAAGGCACTGGACATGAACTCTGCAGAAGATGCTATTGTG
AGGCTGACCAGGGAGGTTGTGCCTGGTATGATAATTACCGGCATGGAAGT
TGCCGAGATTGATGGTGCTCCTCGAATGGGGCCAACATTTGGAGCAATGA
TGATATCGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAG
CCGAATGCATTAGACGGTACATATGTGGGAGGCGTTCACCCTGAGCTGAT
CTTAGCTGCAGCTGATTCTGCTGAGACTGCTGATGCTTAATTTGGTAATA
ACAGGCATCATCACTCATCAGCTGTGTGCATGCAAATAAACTCTGGCAAA
AAAGTAGTTGTATTTAGGTGGTTGTGATGGATGGTTGATGCGAATAATGA
GATAATGTTGTGAGGTTTTGTGAATAAAGTGTTTGTTTCCGGTCCATCAT
GGAACCTTTAATTTTAATTTCTTTCTCCTCTTGTAAGAAACCGTTGTGAG
TTTTT
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