CB292831

Overview
NameCB292831
Unique NameCB292831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB292831 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.001e-31
Identity = 66/104 (63.46%), Postives = 79/104 (75.96%), Query Frame = 1 
Query:  454 LTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPS--KKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNK 759
            +T+    +++S G    + T  +  H     +E+  P   KKKR+LPGNPDP+AEVIALSPK+LMATNRFLCEIC KGFQRDQNLQLHRRGHNLPWKLKQRT+K
Sbjct:    1 MTTEDQTISSSGGYVQSSSTTDHVDHHHHDQHESLNPPLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSK 104
[Close]
BLAST of CB292831 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.224e-29
Identity = 67/107 (62.62%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:  439 ENMSNLTSASGEVTASSGSRVETGTNFYAQHSFSSTNEATPPSKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNK 759
            E +  ++S SG     S S ++        H  S  N   P  KKKR+LPGNPDP+AEVIALSP +LMATNRFLCE+C KGFQRDQNLQLHRRGHNLPWKLKQRT+K
Sbjct:    4 EVLQTISSGSGFAQPQSSSTLD--------HDESLINP--PLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSK 100
[Close]
BLAST of CB292831 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.353e-27
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:  565 SKKKRSLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNK 759
            +KKKR+ PG PDPDA+VIALSP +LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR+ +
Sbjct:   52 AKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQ 116
The following BLAST results are available for this feature:
BLAST of CB292831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MGP_ARATH1.001e-3163.46Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
NUC_ARATH1.224e-2962.62Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
JKD_ARATH4.353e-2783.08Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05ae04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ae04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292831 ID=CB292831; Name=CB292831; organism=Citrus sinensis; type=EST; length=760bp
GCCCTATGAGCTCTTTCTCTTTCTGTTTCTCTCTCATTTTCTCCCTTATT
TTTTGATTTTTTGATTCATTTTCTGATTAATTAATATGGGAATTGGGTTT
GTTTAATCTTCTTGGTGTCATGTCAGCAAAGAATTTTGTTGAAATAAAGA
GGAGATGAGATGATGACTAGTGAGTTTAAGTTTTGCTTTGAATGTTATTA
ATTTGTTCCTTTTGTAACATTTATTTCTTATGGTTTTTGTCTGCTTGAAA
TCATCTTTCTTATCTACTTTCCAAATTAGGGTTTTCTTTTAGATCTTAGG
ACGACCTGTCAGAGATTTAAAAAAGTTGATCCATTTTACCATCTCATCAT
CAGTGAATCTTGTGATTCTGTGTCACCTCAAACACCAAATCCTCATTTAA
ATTAGTTGATGAAGATGATGAAAGGTCTTCTAGTAGAAGAGAATATGTCA
AATTTGACTTCAGCTTCTGGTGAAGTAACTGCTTCTTCGGGTTCAAGAGT
TGAAACTGGCACCAACTTTTACGCACAACATTCTTTTTCTTCAACAAACG
AAGCAACACCACCATCAAAGAAAAAAAGAAGCCTTCCAGGCAACCCAGAC
CCAGATGCAGAAGTCATAGCCTTGTCTCCCAAAAGTTTGATGGCCACAAA
CAGATTCTTATGTGAGATCTGTAACAAGGGGTTTCAAAGAGACCAGAATC
TTCAGCTTCATAGAAGAGGACATAACCTGCCGTGGAAGTTAAAGCAAAGA
ACAAACAAAG
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