CB292832

Overview
NameCB292832
Unique NameCB292832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.309e-66
Identity = 121/142 (85.21%), Postives = 136/142 (95.77%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V +AGFS+PTPIQAQSWPIA+Q RDIVAIAKTGSGKTLGYL+PGF+HL+R RND R+GPT+LVLSPTRELATQIQ+EAVKFG+SSRISCTCLYGGAPKGPQL+D++RG DIVVATPGRLNDILEMRRISL Q+SYLVLDEA
Sbjct:  172 EVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEA 313          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.448e-65
Identity = 121/142 (85.21%), Postives = 134/142 (94.37%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            ++H AGFS+PTPIQAQSWPIALQ RDIVAIAKTGSGKTLGYL+P FIHL++ R +P+LGPT+LVLSPTRELATQIQ EAVKFGKSSRISCTCLYGGAPKGPQL+++ RGVDIVVATPGRLNDILEMRR+SL QVSYLVLDEA
Sbjct:  159 EMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFIHLQQRRKNPQLGPTILVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLRELSRGVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEA 300          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 4.212e-65
Identity = 119/142 (83.80%), Postives = 137/142 (96.48%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V++AGFS+P+PIQAQSWPIA+Q+RDIVAIAKTGSGKTLGYL+PGF+HL+R  ND R+GPT+LVLSPTRELATQIQ EA+KFGKSS+ISC CLYGGAPKGPQLK+I+RGVDIVVATPGRLNDILEM+RISL+QVSYLVLDEA
Sbjct:  175 EVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEA 316          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 4.212e-65
Identity = 120/142 (84.51%), Postives = 134/142 (94.37%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            ++  AGFSSPTPIQAQSWPIALQ +D+VAIAKTGSGKTLGYLLPGF+H+KR +N+PR GPTVLVL+PTRELATQI +EAVKFG+SSRIS TCLYGGAPKGPQL+D+DRGVD+VVATPGRLNDILEMRRISL QVSYLVLDEA
Sbjct:  164 EIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEA 305          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.693e-62
Identity = 117/142 (82.39%), Postives = 132/142 (92.96%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V  AGFS+PTPIQAQSWPIAL++RDIVA+AKTGSGKTLGYL+PGFI LKR +++ R GPTVLVLSPTRELATQIQDEA KFG+SSRIS  CLYGGAPKGPQL+D++RG DIVVATPGRLNDILEMRR+SL+QVSYLVLDEA
Sbjct:  194 EVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEA 335          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.826e-61
Identity = 114/139 (82.01%), Postives = 127/139 (91.37%), Query Frame = 3
Query:  369 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +AGF SPTPIQAQ+WPIALQSRDIVAIAKTGSGKTLGYL+P FI L+ CRND R GPTVL+L+PTRELATQIQDEA++FG+SSRISCTCLYGGAPKGPQLK+++RG DIVVATPGRLNDILEM+ I   QVS LVLDEA
Sbjct:  452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEA 590          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.403e-44
Identity = 89/151 (58.94%), Postives = 112/151 (74.17%), Query Frame = 3
Query:  345 DLCFFQVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            D C   +  +GF  PTPIQ+Q WP+AL+ RD++ IA+TGSGKTL YLLPG +H+      PRL    GP VL+L+PTRELA QIQ E+ KFG  SR   TC+YGGAPKGPQ++D+ RGV+IV+ATPGRL D+LE    +L +V+YLVLDEA
Sbjct:  260 DYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGA---QPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEA 407          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.403e-44
Identity = 87/151 (57.62%), Postives = 112/151 (74.17%), Query Frame = 3
Query:  345 DLCFFQVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            D    +V  AGF+ PTPIQ+Q WP+A++ RD++ IA+TGSGKTL YLLP  +H+      P L    GP VLVL+PTRELA QIQ EA KFG SS+I  TC+YGG PKGPQ++D+ +GV+IV+ATPGRL D++E    +L +V+YLVLDEA
Sbjct:  108 DYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA---QPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEA 255          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.992e-44
Identity = 85/143 (59.44%), Postives = 110/143 (76.92%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            ++  AGF  PTPIQ+Q WP+AL+ RD++ IA+TGSGKTL YLLP  +H+  +    P  GP VLVL+PTRELA QIQ EA KFG SS+I  TC+YGG PKGPQ++D+ +GV+IV+ATPGRL D++E    +L +V+YLVLDEA
Sbjct:  105 EITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEA 247          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.193e-43
Identity = 86/141 (60.99%), Postives = 110/141 (78.01%), Query Frame = 3
Query:  375 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLG----PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            GF+ PTPIQAQ WP+AL+ RD++ IA+TGSGKTL YLLP  +H+      PRLG    P VL+L+PTRELA QIQ+E+ KFG  S +  TC+YGGAPKGPQ++D+ RGV+IV+ATPGRL D+LE +  +L +V+YLVLDEA
Sbjct:  184 GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSA---QPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEA 321          
The following BLAST results are available for this feature:
BLAST of CB292832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH14_ARATH1.309e-6685.21DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]
DB10_NICSY1.448e-6585.21ATP-dependent RNA helicase-like protein DB10 OS=Ni... [more]
RH46_ARATH4.212e-6583.80DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
RH40_ORYSJ4.212e-6584.51DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]
RH14_ORYSJ5.693e-6282.39DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sa... [more]
RH40_ARATH2.826e-6182.01DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop... [more]
RH30_ORYSJ2.403e-4458.94DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sa... [more]
RH20_ARATH2.403e-4457.62DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
RH20_ORYSJ6.992e-4459.44DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]
RH30_ARATH1.193e-4360.99DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ae05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ae05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292832 ID=CB292832; Name=CB292832; organism=Citrus sinensis; type=EST; length=787bp
GCTCTTTAAGTTGCTCCTCGGAGGAGCTAATGTCGTACGCTGCTTTGCCC
TCTATGGGGGGCCTTGCATATAATTTGGAGCGCCCTTATATGGTGGACCA
ATTAATGGAAGGGCTTTCCGAATCACCCAAGTTCATGGCTGGGACTGCAG
TTGGTGATGATTCAGTCTGCCACTCGGTCCAAACGGAAGAAGAGGTCTCC
TCCTGCTCCAGCTTGCATCAGCAAGCATTGGTCGGCTGCTTATGGAGGAT
GATGCTTCTTCTGGCATTAACCATTTCACTATTAATCCTAAAAGAAACCA
ATCAAAACTCTTGAGGCCAGTACCTCTGCTCACAGTGGTTATTGGATTTG
TGCTTTTTCCAGGTACACAATGCTGGATTCTCTTCCCCAACTCCAATTCA
GGCACAGTCATGGCCGATTGCTTTGCAAAGTAGAGATATTGTGGCCATTG
CAAAGACTGGATCTGGGAAAACATTGGGATATCTACTTCCAGGCTTTATT
CATCTTAAGCGCTGCCGTAATGACCCTCGATTGGGTCCAACGGTCTTGGT
ATTGTCACCGACAAGGGAGTTGGCAACTCAGATACAAGATGAAGCTGTGA
AATTTGGGAAGTCGTCAAGAATATCTTGCACTTGTTTATATGGAGGAGCA
CCAAAGGGTCCTCAGTTGAAAGATATTGACAGAGGAGTGGATATTGTGGT
TGCAACTCCTGGCCGATTAAATGATATTCTTGAGATGAGGAGAATCAGCC
TTAATCAAGTTTCTTACCTTGTACTGGATGAGGCTGA
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