CB292832
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2) HSP 1 Score: 253.062 bits (645), Expect = 1.309e-66 Identity = 121/142 (85.21%), Postives = 136/142 (95.77%), Query Frame = 3 Query: 360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785 +V +AGFS+PTPIQAQSWPIA+Q RDIVAIAKTGSGKTLGYL+PGF+HL+R RND R+GPT+LVLSPTRELATQIQ+EAVKFG+SSRISCTCLYGGAPKGPQL+D++RG DIVVATPGRLNDILEMRRISL Q+SYLVLDEA Sbjct: 172 EVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEA 313
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.448e-65 Identity = 121/142 (85.21%), Postives = 134/142 (94.37%), Query Frame = 3 Query: 360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785 ++H AGFS+PTPIQAQSWPIALQ RDIVAIAKTGSGKTLGYL+P FIHL++ R +P+LGPT+LVLSPTRELATQIQ EAVKFGKSSRISCTCLYGGAPKGPQL+++ RGVDIVVATPGRLNDILEMRR+SL QVSYLVLDEA Sbjct: 159 EMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFIHLQQRRKNPQLGPTILVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQLRELSRGVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEA 300
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2) HSP 1 Score: 248.054 bits (632), Expect = 4.212e-65 Identity = 119/142 (83.80%), Postives = 137/142 (96.48%), Query Frame = 3 Query: 360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785 +V++AGFS+P+PIQAQSWPIA+Q+RDIVAIAKTGSGKTLGYL+PGF+HL+R ND R+GPT+LVLSPTRELATQIQ EA+KFGKSS+ISC CLYGGAPKGPQLK+I+RGVDIVVATPGRLNDILEM+RISL+QVSYLVLDEA Sbjct: 175 EVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEA 316
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2) HSP 1 Score: 248.054 bits (632), Expect = 4.212e-65 Identity = 120/142 (84.51%), Postives = 134/142 (94.37%), Query Frame = 3 Query: 360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785 ++ AGFSSPTPIQAQSWPIALQ +D+VAIAKTGSGKTLGYLLPGF+H+KR +N+PR GPTVLVL+PTRELATQI +EAVKFG+SSRIS TCLYGGAPKGPQL+D+DRGVD+VVATPGRLNDILEMRRISL QVSYLVLDEA Sbjct: 164 EIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEA 305
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 5.693e-62 Identity = 117/142 (82.39%), Postives = 132/142 (92.96%), Query Frame = 3 Query: 360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785 +V AGFS+PTPIQAQSWPIAL++RDIVA+AKTGSGKTLGYL+PGFI LKR +++ R GPTVLVLSPTRELATQIQDEA KFG+SSRIS CLYGGAPKGPQL+D++RG DIVVATPGRLNDILEMRR+SL+QVSYLVLDEA Sbjct: 194 EVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEA 335
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 2.826e-61 Identity = 114/139 (82.01%), Postives = 127/139 (91.37%), Query Frame = 3 Query: 369 NAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785 +AGF SPTPIQAQ+WPIALQSRDIVAIAKTGSGKTLGYL+P FI L+ CRND R GPTVL+L+PTRELATQIQDEA++FG+SSRISCTCLYGGAPKGPQLK+++RG DIVVATPGRLNDILEM+ I QVS LVLDEA Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEA 590
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2) HSP 1 Score: 179.104 bits (453), Expect = 2.403e-44 Identity = 89/151 (58.94%), Postives = 112/151 (74.17%), Query Frame = 3 Query: 345 DLCFFQVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785 D C + +GF PTPIQ+Q WP+AL+ RD++ IA+TGSGKTL YLLPG +H+ PRL GP VL+L+PTRELA QIQ E+ KFG SR TC+YGGAPKGPQ++D+ RGV+IV+ATPGRL D+LE +L +V+YLVLDEA Sbjct: 260 DYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGA---QPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEA 407
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.403e-44 Identity = 87/151 (57.62%), Postives = 112/151 (74.17%), Query Frame = 3 Query: 345 DLCFFQVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785 D +V AGF+ PTPIQ+Q WP+A++ RD++ IA+TGSGKTL YLLP +H+ P L GP VLVL+PTRELA QIQ EA KFG SS+I TC+YGG PKGPQ++D+ +GV+IV+ATPGRL D++E +L +V+YLVLDEA Sbjct: 108 DYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA---QPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEA 255
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2) HSP 1 Score: 177.563 bits (449), Expect = 6.992e-44 Identity = 85/143 (59.44%), Postives = 110/143 (76.92%), Query Frame = 3 Query: 360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785 ++ AGF PTPIQ+Q WP+AL+ RD++ IA+TGSGKTL YLLP +H+ + P GP VLVL+PTRELA QIQ EA KFG SS+I TC+YGG PKGPQ++D+ +GV+IV+ATPGRL D++E +L +V+YLVLDEA Sbjct: 105 EITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEA 247
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2) HSP 1 Score: 176.792 bits (447), Expect = 1.193e-43 Identity = 86/141 (60.99%), Postives = 110/141 (78.01%), Query Frame = 3 Query: 375 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLG----PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785 GF+ PTPIQAQ WP+AL+ RD++ IA+TGSGKTL YLLP +H+ PRLG P VL+L+PTRELA QIQ+E+ KFG S + TC+YGGAPKGPQ++D+ RGV+IV+ATPGRL D+LE + +L +V+YLVLDEA Sbjct: 184 GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSA---QPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEA 321 The following BLAST results are available for this feature:
BLAST of CB292832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CB292832 ID=CB292832; Name=CB292832; organism=Citrus sinensis; type=EST; length=787bpback to top |