CB292841

Overview
NameCB292841
Unique NameCB292841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB292841 vs. ExPASy Swiss-Prot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 35/97 (36.08%), Postives = 59/97 (60.82%), Query Frame = 2 
Query:  212 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAXXXXXXXXXXXXYLG 502
            +EN GN+L+V+G++ R+ + EL++ F+  G V  V ++ +P T+ SRGFGF++ +TVEEA   I  L+     GR++ V++A            Y+G
Sbjct:   96 SENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192
The following BLAST results are available for this feature:
BLAST of CB292841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YDC1_SCHPO1.626e-1136.08Uncharacterized RNA-binding protein C25G10.01 OS=S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05ae10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ae10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292841 ID=CB292841; Name=CB292841; organism=Citrus sinensis; type=EST; length=800bp
GCACCTTGGTGAGATCGAAAGAGAAGCGAACTCTAACCCAAGCGCATAAT
CTCGAAACACACAGGCAAGAGAGTAGATTTTACAAGTACTTGATACGATG
TCTTACTCTAAGAGGTCAAGGTATTCACGCTCTTCTTCACCATACAATAG
ATACGGCAGGTCAATGTCTAGGTCAATGTCTCGCAGCCGATCAAGGAGCC
GATCAAGTGATGCGGAAAATCCTGGCAACAATTTGTATGTAACAGGATTG
TCACCTCGTATCACCAAAAGAGAACTTGAGAAGCATTTTGCAGCTGAGGG
AAAGGTGATTGATGTTCACCTTGTGGTCGATCCGTGGACAAGAGAGTCTC
GTGGTTTTGGGTTTGTTACGATGGCCACAGTTGAGGAGGCTGACCGTTGC
ATCAAGTATTTGGATCGTTCTGTTCTTGAGGGTCGCATCATTACTGTGGA
GAGGGCAAGGAGGCGGAGAGGGCGAACTCCCACTCCAGGAAGGTATTTGG
GGCTGAGAACCATTCGTGTCTGTCGTCGATCACCTAGCAACTCTCCTCCT
CGTCGATCTCCAAGCTACTCTCCTTATCGTTGGAGCAGAAGTCGTTCTCC
CAGTTATTCATCTGAACGGAGCAGGGACAGATCTTACTCTCCTGACTATA
GGAGGAGGAGGCCTTACTCCCCTAATTATAGCCGGCGTAGATCATACTCA
TCTTACTACAGTCGGCGCCGTTCTTATTCTCGTTCCCGTTCCCCTTATAG
TAAGTCTCCAGATGACCGCGGCTATCGGAGGTGTGACCGTTCTTACTCTC
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