CB292868

Overview
NameCB292868
Unique NameCB292868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: NFS1_ARATH (Cysteine desulfurase 1, mitochondrial OS=Arabidopsis thaliana GN=NIFS PE=1 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.141e-95
Identity = 169/231 (73.16%), Postives = 196/231 (84.85%), Query Frame = 2
Query:   17 RSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            R LS A AAA    YE +     I +KGVRI+GRPLYLDMQATTP+DPRV DAM    +  YGNPHSRTHL+GWE+E AVE AR+Q+A LI ASPKEI+F SGATE+NN+++KGVMHFYKD K+HVITTQTEHKCVLDSCRHLQQEGFE+TYLPV  DG+V+L+ LR AIRPDTGL+S+MAVNNEIGV+QPMEEIG ICKE  +PFHTDAAQA+GKIPVDV+KWN +LMS+
Sbjct:   25 RYLSTA-AAATEVNYEDES----IMMKGVRISGRPLYLDMQATTPIDPRVFDAMNASQIHEYGNPHSRTHLYGWEAENAVENARNQVAKLIEASPKEIVFVSGATEANNMAVKGVMHFYKDTKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKTDGLVDLEMLREAIRPDTGLVSIMAVNNEIGVVQPMEEIGMICKEHNVPFHTDAAQAIGKIPVDVKKWNVALMSM 250          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: NFS1_CANMA (Cysteine desulfurase, mitochondrial OS=Candida maltosa GN=SPL1 PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.718e-80
Identity = 140/198 (70.71%), Postives = 167/198 (84.34%), Query Frame = 2
Query:  116 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            RP+YLD+QATTPVDPRVLD ML FY   YGNPHS TH +GWE++  VE AR  IAD+I A PKEIIFTSGATE+NN++IKGV  FYK  K+H+ITTQTEHKCVLDS RH+Q EGF+ITYLPV ++G++NLD+L+ AIR DT L+SVMAVNNEIGVIQP++EIGQIC+E KI FHTDAAQA GKIP+DV + N  L+S+
Sbjct:   83 RPIYLDVQATTPVDPRVLDKMLEFYTGLYGNPHSSTHAYGWETDKEVEKARGYIADVINADPKEIIFTSGATETNNMAIKGVPRFYKKTKKHIITTQTEHKCVLDSARHMQDEGFDITYLPVNSEGLINLDDLKKAIRKDTVLVSVMAVNNEIGVIQPLKEIGQICRENKIFFHTDAAQAYGKIPIDVNEMNIDLLSI 280          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: NFS1_DROME (Probable cysteine desulfurase, mitochondrial OS=Drosophila melanogaster GN=CG12264 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.497e-79
Identity = 141/228 (61.84%), Postives = 177/228 (77.63%), Query Frame = 2
Query:   26 SNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            S   A   +T+ E +E Q    +K  +  GRPLYLD QATTP+DPRVLDAMLP+  + YGNPHSRTH +GWE+E AVE AR Q+A LIGA PKEIIFTSGATESNN+++KGV  FY  KKRHVITTQTEHKCVLDSCR L+ EGF++TYLPV A+G+++L +L   I  +T L+S+M VNNEIGV QP++EIG++C+  ++ FHTDAAQA+GK+P+DV   N  LMS+
Sbjct:   32 SRTAAKPAATSKEFRERQVRFNIKNEQTEGRPLYLDAQATTPMDPRVLDAMLPYLTNFYGNPHSRTHAYGWETESAVEKAREQVATLIGADPKEIIFTSGATESNNIAVKGVARFYGTKKRHVITTQTEHKCVLDSCRALENEGFKVTYLPVLANGLIDLQQLEETITSETSLVSIMTVNNEIGVRQPVDEIGKLCRSRRVFFHTDAAQAVGKVPLDVNAMNIDLMSI 259          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: NFS1_CANAL (Cysteine desulfurase, mitochondrial OS=Candida albicans GN=NFS1 PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.497e-79
Identity = 137/198 (69.19%), Postives = 168/198 (84.85%), Query Frame = 2
Query:  116 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            RP+YLD+QATTPVDPRVLD ML FY   YGNPHS TH +GWE++  VE AR+ IAD+I A PKEIIFTSGATE+NN++IKGV  FYK  K+H+ITTQTEHKCVLDS RH+Q EGFE+TYLPV ++G++NLD+L+ AIR DT L+S+MAVNNEIGVIQP++EIG+IC+E K+ FHTDAAQA GKIP+DV + N  L+S+
Sbjct:   87 RPIYLDVQATTPVDPRVLDKMLEFYTGLYGNPHSSTHAYGWETDKEVEKARTYIADVINADPKEIIFTSGATETNNMAIKGVPRFYKKTKKHIITTQTEHKCVLDSARHMQDEGFEVTYLPVSSEGLINLDDLKKAIRKDTVLVSIMAVNNEIGVIQPLKEIGKICRENKVFFHTDAAQAYGKIPIDVNEMNIDLLSI 284          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: NFS1_PONAB (Cysteine desulfurase, mitochondrial OS=Pongo abelii GN=NFS1 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.355e-79
Identity = 137/198 (69.19%), Postives = 166/198 (83.84%), Query Frame = 2
Query:  116 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA P+EIIFTSGATESNN++IKGV  FY+ +K+H+ITTQTEHKCVLDSCR L+ EGF++TYLPV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EIG+IC   K+ FHTDAAQA+GKIP+DV      LMS+
Sbjct:   57 RPLYMDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSI 254          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: NFS1_HUMAN (Cysteine desulfurase, mitochondrial OS=Homo sapiens GN=NFS1 PE=1 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 4.355e-79
Identity = 137/198 (69.19%), Postives = 166/198 (83.84%), Query Frame = 2
Query:  116 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA P+EIIFTSGATESNN++IKGV  FY+ +K+H+ITTQTEHKCVLDSCR L+ EGF++TYLPV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EIG+IC   K+ FHTDAAQA+GKIP+DV      LMS+
Sbjct:   57 RPLYMDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSI 254          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: NFS1_RAT (Cysteine desulfurase, mitochondrial OS=Rattus norvegicus GN=Nfs1 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.655e-78
Identity = 136/198 (68.69%), Postives = 165/198 (83.33%), Query Frame = 2
Query:  116 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            RPLY+D++ATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA P+EIIFTSGATESNN++IKGV  FY+ +K+H++TTQTEHKCVLDSCR L+ EGF +TYLPV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EIGQIC   K+ FHTDAAQA+GKIP+DV      LMS+
Sbjct:   51 RPLYMDVRATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRVTYLPVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGQICSSRKLYFHTDAAQAVGKIPLDVNDMKIDLMSI 248          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: NFS1_MOUSE (Cysteine desulfurase, mitochondrial OS=Mus musculus GN=Nfs1 PE=2 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 3.686e-78
Identity = 136/198 (68.69%), Postives = 164/198 (82.83%), Query Frame = 2
Query:  116 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA P+EIIFTSGATESNN++IKGV  FY+ +K+H++TTQTEHKCVLDSCR L+ EGF +TYLPV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EI QIC   K+ FHTDAAQA+GKIP+DV      LMS+
Sbjct:   51 RPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPREIIFTSGATESNNIAIKGVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRVTYLPVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIRQICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSI 248          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: NFS1_DICDI (Probable cysteine desulfurase, mitochondrial OS=Dictyostelium discoideum GN=nfs1 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.885e-76
Identity = 128/205 (62.44%), Postives = 166/205 (80.98%), Query Frame = 2
Query:   95 KGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            +G+    +P+YLDMQ+TTP+DPRVLDAMLP Y   YGNPHS+TH +GW S   VE AR +++ +IGA  KEIIFTSGATES N++IKGV  FYK+KK H+ITT TEHKC+LDSCRHL+ EGF++TYLPVG +G+V+L+ L+  I P T L+++MAVNNEIGV+QP++EIG+IC+E  + FHTDAAQA+GKIP+DV   N  L+S+
Sbjct:   43 RGIAGEKQPIYLDMQSTTPIDPRVLDAMLPLYTENYGNPHSKTHAYGWTSNDLVEDAREKVSKIIGADSKEIIFTSGATESGNIAIKGVARFYKEKKNHIITTVTEHKCILDSCRHLEMEGFKVTYLPVGENGLVDLELLKNTITPQTSLVTIMAVNNEIGVVQPIKEIGKICRENGVFFHTDAAQAVGKIPIDVNDMNIDLLSI 247          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: NFS1_SCHPO (Probable cysteine desulfurase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC21D10.11c PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.450e-74
Identity = 133/221 (60.18%), Postives = 169/221 (76.47%), Query Frame = 2
Query:   65 PQEDQNGITLKGVRIAG------RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            P+     +TL   + A        P+Y+D QAT+P+D RVLD+MLPF+   YGNPHSRTH +GWE+E AVE AR +IA +I A P+EIIFTSGATESNN  +KGV  FYK +K+H+++ QTEHKCVLDS R LQ+EGFE+T+LPV  +G++NLDELR AIRPDT  +SVMAVNNEIGV QP+EEIG+IC++ K+ FH+DAAQ  GKI +DV + N  LMS+
Sbjct:   76 PENSLKTVTLDQAQTAASTVTGLHPIYMDFQATSPLDYRVLDSMLPFFTGIYGNPHSRTHAYGWEAEKAVENARQEIASVINADPREIIFTSGATESNNAILKGVARFYKSRKKHLVSVQTEHKCVLDSLRALQEEGFEVTFLPVQTNGLINLDELRDAIRPDTVCVSVMAVNNEIGVCQPLEEIGKICRQKKVFFHSDAAQGYGKIDIDVNRMNIDLMSI 296          
The following BLAST results are available for this feature:
BLAST of CB292868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 289
Match NameE-valueIdentityDescription
NFS1_ARATH1.141e-9573.16Cysteine desulfurase 1, mitochondrial OS=Arabidops... [more]
NFS1_CANMA6.718e-8070.71Cysteine desulfurase, mitochondrial OS=Candida mal... [more]
NFS1_DROME1.497e-7961.84Probable cysteine desulfurase, mitochondrial OS=Dr... [more]
NFS1_CANAL1.497e-7969.19Cysteine desulfurase, mitochondrial OS=Candida alb... [more]
NFS1_PONAB4.355e-7969.19Cysteine desulfurase, mitochondrial OS=Pongo abeli... [more]
NFS1_HUMAN4.355e-7969.19Cysteine desulfurase, mitochondrial OS=Homo sapien... [more]
NFS1_RAT1.655e-7868.69Cysteine desulfurase, mitochondrial OS=Rattus norv... [more]
NFS1_MOUSE3.686e-7868.69Cysteine desulfurase, mitochondrial OS=Mus musculu... [more]
NFS1_DICDI5.885e-7662.44Probable cysteine desulfurase, mitochondrial OS=Di... [more]
NFS1_SCHPO1.450e-7460.18Probable cysteine desulfurase, mitochondrial OS=Sc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ag02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ag02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292868 ID=CB292868; Name=CB292868; organism=Citrus sinensis; type=EST; length=711bp
GCACGATGCCGGCGTCCGCTCCCTTTCCAACGCCACAGCCGCCGCGGTTT
CTACGGCGTATGAACCTCAGGAGGACCAAAACGGAATCACCTTGAAAGGC
GTGAGAATCGCGGGCCGCCCTCTCTACCTCGATATGCAAGCAACCACTCC
AGTCGACCCACGTGTCCTCGATGCCATGCTCCCTTTCTATCTTTCTCGTT
ACGGTAACCCCCACTCCCGGACCCACCTCTTCGGGTGGGAATCCGAAGTC
GCCGTCGAAACCGCCCGCTCTCAAATCGCCGATCTTATCGGCGCTTCTCC
TAAAGAGATAATTTTCACTTCCGGCGCAACGGAATCGAATAATGTCTCCA
TCAAAGGAGTCATGCACTTTTACAAGGATAAAAAGCGCCACGTCATCACC
ACTCAGACCGAGCACAAGTGCGTTCTCGATTCGTGCCGGCATCTTCAGCA
GGAAGGTTTTGAAATTACTTATTTACCTGTTGGAGCTGATGGGATTGTTA
ATTTAGATGAATTGCGAGCTGCTATTAGGCCTGACACCGGCTTGATTTCT
GTTATGGCGGTTAACAACGAAATTGGCGTGATTCAGCCTATGGAAGAAAT
CGGGCAAATTTGTAAAGAATTTAAAATCCCGTTTCACACTGATGCTGCCC
AGGCGTTGGGGAAGATTCCGGTTGATGTCGAGAAATGGAATGCGAGTTTG
ATGTCGTTGAG
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