CB292874

Overview
NameCB292874
Unique NameCB292874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292874 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 5.722e-120
Identity = 217/226 (96.02%), Postives = 219/226 (96.90%), Query Frame = 3
Query:   84 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELIKNPNIHIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRIGGVVTNWALVSMNHDTQSCMDP 761
            MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYEL KNPNI IAIIEQSVSPGGGAWL GQLFSAMVVRKPAHIFLDELGIDYDEQD+YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR+GGVVTNWALVSMNHDTQSCMDP
Sbjct:    1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDP 226          
BLAST of CB292874 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.243e-90
Identity = 163/204 (79.90%), Postives = 181/204 (88.73%), Query Frame = 3
Query:  150 SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELIKNPNIHIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRIGGVVTNWALVSMNHDTQSCMDP 761
            SSF+G P++PS +R+QP K+    ++S+S + SPPYDL  F FDPIKESIVSREMTRRYM DMITYADTD    GAGS+GL C YEL KNP++ +AIIEQSVSPGGGAWL GQLFS MVVRKPAH+FLDELGI+YDEQD+YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR+GGVVTNWALVSMNHDTQSCMDP
Sbjct:   20 SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVVRKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDP 222          
BLAST of CB292874 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.385e-87
Identity = 165/227 (72.69%), Postives = 190/227 (83.70%), Query Frame = 3
Query:   84 MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELIKNPNIHIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRIGGVVTNWALVSMNHDTQSCMDP 761
            MAA+AST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YDLN F FDPIKESIVSREMTRRYMTDMITYA+TD    GAGSAGLS AYE+ KNPN+ +AIIEQSVSPGGGAWL GQLFSAM+VRKPAH+FLDE+G+ YDEQD+YVV+KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG R+GGVVTNWALV+ NH TQSCMDP
Sbjct:    1 MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDP 219          
BLAST of CB292874 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.735e-82
Identity = 158/224 (70.54%), Postives = 178/224 (79.46%), Query Frame = 3
Query:  123 SSTTNKLFDSSFHGAPMSPSLLRLQPIK----------SSRPNNLSISASAS-PPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELIKNPNIHIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRIGGVVTNWALVSMNHDTQSCMDP 761
            ++  + L  SSF G+ + P+  R  P             + P   S+S S+S PPYDL +F+F PIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYEL K+P + IAI+EQSVSPGGGAWL GQLFSAMVVRKPAH+FLDELG+ YDE + YVVIKHAALFTST+MS LLARPNVKLFNAVA EDLIV+GGR+GGVVTNWALVSMNHDTQSCMDP
Sbjct:    3 TAAASSLLKSSFAGSRL-PAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLLARPNVKLFNAVAVEDLIVRGGRVGGVVTNWALVSMNHDTQSCMDP 225          
BLAST of CB292874 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.236e-81
Identity = 154/222 (69.37%), Postives = 176/222 (79.28%), Query Frame = 3
Query:  123 SSTTNKLFDSSFHGAPMSPSLLRLQ---------PIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELIKNPNIHIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRIGGVVTNWALVSMNHDTQSCMDP 761
            ++  + L  SSF G+ + PS  R           P     P   SIS S +PPYDL +F+F PIKESIVSREMTRRYMTDMIT+ADTD    GAGSAGLSCAYEL K+P + +AI+EQSVSPGGGAWL GQLFSAMVVR+PAH+FLDELG+ YDE + YVV+KHAALFTST+MS+LLARPNVKLFNAVA EDLIV+ GR+GGVVTNWALVSMNHDTQSCMDP
Sbjct:    3 TTAASSLLKSSFAGSRL-PSATRTTTPSSVAVATPRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQSVSPGGGAWLGGQLFSAMVVRRPAHLFLDELGVGYDEAEDYVVVKHAALFTSTVMSRLLARPNVKLFNAVAVEDLIVRRGRVGGVVTNWALVSMNHDTQSCMDP 222          
BLAST of CB292874 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.062e-57
Identity = 114/182 (62.64%), Postives = 140/182 (76.92%), Query Frame = 3
Query:  237 ASASPPYDLN-TFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-IKNPNIHIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RIGGVVTNWALVSMNHDTQSCMDP 761
            + A P Y L+ +F F PI+ES VSR MTRRY +D+  YA++D    GAGSAGL+ AY +  + P++ IAIIE SV+PGGGAWL GQLFSAMVVRKPA +FL+E+G+ Y+++  YVV+KHAALFTST+M++ LA PNVKLFNA A EDLIVK G     RI GVVTNW LVS+NH  QSCMDP
Sbjct:   37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALFTSTVMARTLALPNVKLFNATAVEDLIVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCMDP 218          
BLAST of CB292874 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 7.613e-56
Identity = 111/169 (65.68%), Postives = 130/169 (76.92%), Query Frame = 3
Query:  270 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-IKNPNIHIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK----GGRIGGVVTNWALVSMNHDTQSCMDP 761
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L  K P++ IAIIE SVSPGGGAWL GQLFSAM++RKPA  FL E+G+ Y+++ +YVV+KHAALFTSTIMSK+L  PN+KLFNA   EDLI +    G RI GVVTNW LVSM+HD QSCMDP
Sbjct:   44 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMIMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQMPNIKLFNATCVEDLITRPSEEGVRIAGVVTNWTLVSMHHDDQSCMDP 212          
BLAST of CB292874 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.099e-54
Identity = 111/169 (65.68%), Postives = 128/169 (75.74%), Query Frame = 3
Query:  270 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-IKNPNIHIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK----GGRIGGVVTNWALVSMNHDTQSCMDP 761
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS  Y L  K P++ IAIIE SVSPGGGAWL GQLFSAMV+RKPA  FL E+G+ Y+++ +YVV+KHAALFTSTIMSK+L  PN KLFNA   EDLI +    G RI GVVTNW LVSM+HD QSCMDP
Sbjct:   48 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIVGAGSCGLSTRYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMVMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQLPNCKLFNATCVEDLITRPSKEGVRISGVVTNWTLVSMHHDDQSCMDP 216          
BLAST of CB292874 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.126e-54
Identity = 109/201 (54.23%), Postives = 138/201 (68.66%), Query Frame = 3
Query:  192 LQPIKSSRPNNLSISASA---SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-IKNPNIHIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-------GRIGGVVTNWALVSMNHDTQSCMDP 761
            + P+KS + +N +++  A    P  +L   KF PIKE  V R M RRY  DM   A +D    GAGSAGLSCAY L    P++ I I+E +V+PGGG WL GQL SAMV RKPA  FLD++G+ Y+++ ++VV+KHAALFTST++SK+LA PNVK+FNA A EDLI+K         RI G VTNW LVS+NHD QSCMDP
Sbjct:   24 MDPLKSKQQSNATVNKPAFKPEPAVNLTPIKFAPIKEHQVQRAMVRRYFQDMEERAISDVIIVGAGSAGLSCAYALGTARPDLKITILESNVAPGGGCWLGGQLMSAMVCRKPADEFLDQVGVPYEDEGNFVVVKHAALFTSTVLSKVLAMPNVKMFNATACEDLIIKPCPINPGVQRIAGCVTNWTLVSLNHDHQSCMDP 224          
BLAST of CB292874 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.755e-52
Identity = 106/172 (61.63%), Postives = 130/172 (75.58%), Query Frame = 3
Query:  270 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELIK-NPNIHIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDE--QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-----GGRIGGVVTNWALVSMNHDTQSCMDP 761
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L K  P++ IAI+E SVSPGGGAWL GQLFSAMV+R+PA +FL+ELG+ Y+E    +YVV+KHA+LFTST+MSK+L+ PNVKLFNA A EDLI +       +I GVV NW LV+++HD  SCMDP
Sbjct:   48 FKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWLGGQLFSAMVMRRPAEVFLNELGVPYEEDANPNYVVVKHASLFTSTLMSKVLSFPNVKLFNATAVEDLITRPTENGNPQIAGVVVNWTLVTLHHDDHSCMDP 219          
The following BLAST results are available for this feature:
BLAST of CB292874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
THI4_CITSI5.722e-12096.02Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.243e-9079.90Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH6.385e-8772.69Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE4.735e-8270.54Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE5.236e-8169.37Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI2_SCHPO1.062e-5762.64Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_FUSOX7.613e-5665.68Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSSH1.099e-5465.68Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_UROFA7.126e-5454.23Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_ASPOR1.755e-5261.63Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ag05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ag05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292874 ID=CB292874; Name=CB292874; organism=Citrus sinensis; type=EST; length=761bp
GCCCCTTGCACTGCTGCAAATCAAATTACTTCTCATTATCAACCTTCTAA
GCAGCAGGGGAAGGAGGGGTAAAAAAAAAAAACATGGCAGCCATGGCTTC
TACAGCTTTCGCTCCTTCAGTTTCGTCTACCACCAATAAGCTCTTTGACT
CATCCTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCC
ATCAAATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCC
TCCTTATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTG
TTTCTCGTGAAATGACGCGCAGGTACATGACGGACATGATCACTTATGCT
GACACTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGC
TTATGAGCTCATCAAAAACCCCAACATTCACATTGCTATTATCGAACAGT
CTGTTAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTCTCTGCC
ATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGA
CTACGATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGCTGTTCA
CCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTT
AATGCAGTGGCAGCCGAGGACTTGATAGTCAAAGGCGGCAGAATTGGTGG
TGTGGTGACCAACTGGGCGTTGGTGTCAATGAATCACGATACACAGTCTT
GCATGGATCCC
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