CB292889

Overview
NameCB292889
Unique NameCB292889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292889 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26
Identity = 63/144 (43.75%), Postives = 86/144 (59.72%), Query Frame = -1
Query:  255 GGEESVVQKLNPLFPLMGK-VNSMXXXXXXXXXXXGNQIPIATTMVGLVEGMVYAPKAGLNVELFLNAISTGAAGSKSLDLPGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALVQQLFLSFKAPGEGNLGTQPL 683
            GGE+   +   P+F LMG+ +               NQI IA  M+G+ E M YA K+GL  E  L +I+TGAAGS SL     R+L+ +FEPGF+V HF+KD+GI L+E + MG  +PGL+L + L+    A GE N GTQ +
Sbjct:  139 GGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEPENVLKSITTGAAGSWSLSNLAPRMLQGNFEPGFYVKHFIKDMGIALEEAELMGEEMPGLSLAKSLYDKLAAQGEENSGTQSI 282          
BLAST of CB292889 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = -1
Query:  228 GGEESVVQKLNPLFPLMGK-VNSMXXXXXXXXXXXGNQIPIATTMVGLVEGMVYAPKAGLNVELFLNAISTGAAGSKSLDLPGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALVQQLFLSFKAPGEGNLGTQPLILAFERVNN 683
            GG+E+V +++ PLF L+GK +  +            NQI +A  +  + E +++A KAG +      A+  G A S+ L++ G R++KR F PGF +    KDL + L+  + + L LP  A  Q+LF +  A G   L    L+ A E + N
Sbjct:  136 GGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMAN 288          
BLAST of CB292889 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 45/154 (29.22%), Postives = 71/154 (46.10%), Query Frame = -1
Query:  225 GGEESVVQKLNPLFPLM-GKVNSMXXXXXXXXXXXGNQIPIATTMVGLVEGMVYAPKAGLNVELFLNAISTGAAGSKSLDLPGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALVQQLFLSFKAPGEGNLGTQPLILAFERVNNV 683
            GG++++  K   L   M G V               NQ+ +A  +  + E +  A KAG+N +L   AI  G AGS  LD     ++ R+F+PGF ++  +KDL   L     +G  LP  A V ++  + +A G G      L   +E++  V
Sbjct:  137 GGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKV 290          
BLAST of CB292889 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 45/154 (29.22%), Postives = 71/154 (46.10%), Query Frame = -1
Query:  225 GGEESVVQKLNPLFPLM-GKVNSMXXXXXXXXXXXGNQIPIATTMVGLVEGMVYAPKAGLNVELFLNAISTGAAGSKSLDLPGSRILKRDFEPGFFVNHFVKDLGICLKECQNMGLALPGLALVQQLFLSFKAPGEGNLGTQPLILAFERVNNV 683
            GG++++  K   L   M G V               NQ+ +A  +  + E +  A KAG+N +L   AI  G AGS  LD     ++ R+F+PGF ++  +KDL   L     +G  LP  A V ++  + +A G G      L   +E++  V
Sbjct:  137 GGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKV 290          
The following BLAST results are available for this feature:
BLAST of CB292889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YKWC_BACSU8.831e-2643.75Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
GLXR_ECOLI6.343e-1632.682-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOLI1.910e-1229.222-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL61.910e-1229.222-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05ah05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ah05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292889 ID=CB292889; Name=CB292889; organism=Citrus sinensis; type=EST; length=683bp
AAAAATTCAGGCGTTTTTGAACTTTTCCATTTCCATAAACACTAAACCAT
AATTTACCAGAATTATATACCAAACAGAAAAATAACAAACAACAGCAACA
TATTGGGGGGATCCACCCAACAATGGATGAAAAATCAAGGGCAGTAATTA
AAATGCTTGTTGGTACATAAAAAAAAATTACCAATCTAAGCTGACGGGTT
GGAGGGGACAGCATTATCAAAACGAACATTATTAACCCTCTCGAAAGCCA
AAATCAATGGTTGAGTACCCAAATTGCCTTCCCCGGGAGCCTTGAACGAC
AAGAAAAGCTGCTGAACCAAAGCCAGGCCAGGTAAAGCAAGCCCCATATT
CTGACACTCTTTTAAACAAATCCCCAAATCTTTCACAAAATGATTCACAA
AAAAACCCGGCTCAAAATCTCTCTTTAAAATCCTACTCCCGGGCAAGTCC
AGCGACTTGGAACCTGCAGCTCCCGTTGATATGGCGTTTAAAAATAATTC
CACATTTAGCCCTGCCTTGGGAGCATAAACCATTCCCTCCACTAATCCAA
CCATCGTAGTAGCGATCGGGATTTGATTCCCCAGCTTCCCGAATTGTCCT
TTCCCACTGCCACCCATGGAATTAACTTTCCCCATGAGGGGAAAAAGGGG
ATTTAACTTTTGAACTACGGATTCCTCCCCTCC
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