CB292890

Overview
NameCB292890
Unique NameCB292890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292890 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.041e-45
Identity = 95/214 (44.39%), Postives = 133/214 (62.15%), Query Frame = 1
Query:  157 VGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSL 795
            +G+IG G+MG+SM +H+LN G+ V V+ RT  KA+ +L  GA   D+   L+ ++DV+ ++VGYPSDV  V    S+G +   + G  ++DMTT               K   A+DAPVSGGD GA+ GTLAI  GG++   +   P+F+LMG+ + Y G +G GQ  K+ NQI IA  M+G+ E M YA K+GL  E  L +I+TGAAGS SL
Sbjct:    5 IGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIITMVGYPSDVEEVYF-GSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEPENVLKSITTGAAGSWSL 217          
BLAST of CB292890 vs. ExPASy Swiss-Prot
Match: Y1503_SHEFN (Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.172e-31
Identity = 80/217 (36.87%), Postives = 116/217 (53.46%), Query Frame = 1
Query:  154 RVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLD-IGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD 798
            +V +IG G+MG  M  HL+  G+ VTV+NRT +KA   ++  G   AD+P   A   D+VF+ VG   D+R V+L    G + G+  G I+VD TT                N + +DAPVSGG  GA+ G L +  GGD++    + P+ +   +    +G  G GQ  K+ NQI IA  + GL EG+ +A  AGL+    +  IS GAA S  ++
Sbjct:    3 KVAFIGLGVMGFPMAGHLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDIVFTCVGNDDDLRQVVLG-EHGIVHGMHAGAILVDHTTASADVAREIAAYIEPLNIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIAGVVQGLAEGLHFAKSAGLDGLKVIEVISKGAAQSWQME 218          
BLAST of CB292890 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.574e-30
Identity = 76/216 (35.19%), Postives = 117/216 (54.17%), Query Frame = 1
Query:  154 RVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD 798
            +VG+IG GIMG+ M  +LL AGY++ V +R       ++  GA  A +  ++A Q DV+ +++     V+ V L   +G + G +PG +++DM++               K    +DAPVSGG+  A  GTL++  GGD+++  K   L  A+ G V + G  G G   KLANQ+ +A  +  + E +  A KAG+N +L   AI  G AGS  LD
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVAL-GENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD 216          
BLAST of CB292890 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.574e-30
Identity = 76/216 (35.19%), Postives = 117/216 (54.17%), Query Frame = 1
Query:  154 RVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD 798
            +VG+IG GIMG+ M  +LL AGY++ V +R       ++  GA  A +  ++A Q DV+ +++     V+ V L   +G + G +PG +++DM++               K    +DAPVSGG+  A  GTL++  GGD+++  K   L  A+ G V + G  G G   KLANQ+ +A  +  + E +  A KAG+N +L   AI  G AGS  LD
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVAL-GENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD 216          
BLAST of CB292890 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 70/220 (31.82%), Postives = 111/220 (50.45%), Query Frame = 1
Query:  142 PTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN-YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD 798
            PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GAH+  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD+ V +  +  F  MGK + ++G  G      L   +   + M  + EGM  A   G + +  L+ ++ G   S  LD
Sbjct:  246 PTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFMATIAEGMTLAQVTGQSQQTLLDILNQGQLASIFLD 464          
BLAST of CB292890 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 71/222 (31.98%), Postives = 110/222 (49.55%), Query Frame = 1
Query:  139 SPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYM--GGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD 798
            +PT+ R+G++G G+MG  + ++LL  G+ VTV+NRT  K    +  GA L  +P  + S  D+ FS V  P   R ++L P SG L G+RPG   V+M+T               +    ++APVSG  + +  G L I A GD SV +  +  F  MGK ++   G +G      L   +   + M  + EG+  A   G + + FL+ +  G   S  +D
Sbjct:  172 TPTDKRIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGP-SGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSFMATIAEGLTLAQATGQSQQTFLDILCQGQMASTFVD 392          
BLAST of CB292890 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 76/218 (34.86%), Postives = 119/218 (54.59%), Query Frame = 1
Query:  154 RVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSK-AQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLDL 801
            ++G+IG GIMG  M  +L  AG+ + V   T+   A  LL +GA   ++   +   SD++F +V     V  VL   +    + L+ G  IVDM++                    +DAPVSGG+ GA+ GTL+I  GGDE+V +++ PLF L+GK +  +GG+G GQ  K+ANQI +A  +  + E +++A KAG +      A+  G A S+ L++
Sbjct:    2 KLGFIGLGIMGTPMAINLARAGHQLHV--TTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK-GKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEV 216          
BLAST of CB292890 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.801e-26
Identity = 69/221 (31.22%), Postives = 111/221 (50.23%), Query Frame = 1
Query:  139 SPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN-YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD 798
            +PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK + ++G  G      L   +   + M  + EG+  AH  G + +  L+ ++ G   S  LD
Sbjct:  264 TPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHVTGQSQQTLLDILNQGQLASIFLD 483          
BLAST of CB292890 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.168e-25
Identity = 69/229 (30.13%), Postives = 112/229 (48.91%), Query Frame = 1
Query:  115 TVASTDPASPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN-YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD 798
            + A     +PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK + ++G  G      L   +   + M  + EG+  A   G + +  L+ ++ G   S  LD
Sbjct:  256 STAVNGSVTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLD 483          
BLAST of CB292890 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.525e-25
Identity = 68/221 (30.77%), Postives = 110/221 (49.77%), Query Frame = 1
Query:  139 SPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVN-YMGGSGKGQFAKLANQITIATTMVGLVEGMVYAHKAGLNVELFLNAISTGAAGSKSLD 798
            +PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK + ++G  G      L   +   + M  + EG+  A   G + +  L+ ++ G   S  LD
Sbjct:  263 TPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLD 482          
The following BLAST results are available for this feature:
BLAST of CB292890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
YKWC_BACSU5.041e-4544.39Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
Y1503_SHEFN3.172e-3136.87Uncharacterized oxidoreductase Sfri_1503 OS=Shewan... [more]
GARR_ECOLI1.574e-3035.192-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL61.574e-3035.192-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GLYR1_XENTR4.740e-2731.82Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_DANRE8.086e-2731.98Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLXR_ECOLI8.086e-2734.862-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GLYR1_HUMAN1.801e-2631.22Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_BOVIN1.168e-2530.13Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]
GLYR1_RAT1.525e-2530.77Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ah05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ah05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292890 ID=CB292890; Name=CB292890; organism=Citrus sinensis; type=EST; length=803bp
GCCCTATTGACGCTACTGCCACTCCTATTGGTCCTGCGCTCCCGCATGGC
TCACTCTTACTCCCGCTCAGTTTCTTCACTCGTGACTCTCCTCCGCCGCC
GCCGCTCAATGGCTACTGTCGCATCCACCGATCCCGCCAGCCCCACCAAC
ACCCGCGTCGGCTGGATCGGCACAGGCATCATGGGTCGATCCATGTGCGC
CCACTTACTCAATGCCGGCTACACCGTCACCGTCTTCAACCGCACCCTCT
CCAAGGCCCAGCCTCTCCTCGACATCGGTGCCCACCTCGCCGACTCCCCC
CATTCGCTCGCTTCCCAATCCGACGTCGTTTTCTCCATAGTCGGCTACCC
TTCCGACGTCCGCCACGTCCTCCTCCACCCCTCTTCCGGCGCCCTCTCTG
GCCTTCGTCCCGGTGGAATCATCGTCGACATGACCACCTCCGAACCCTCC
CTCGCCTCCGAGTTATCCGCCGCCGCCTCCTCCAAAAACTGCTCCGCCAT
CGACGCCCCTGTGTCCGGCGGTGACCGCGGCGCCAAAACCGGAACCCTCG
CTATATTCGCCGGAGGGGACGAATCCGTAGTTCAAAAGTTAAATCCCCTT
TTTGCCCTCATGGGGAAAGTTAATTACATGGGTGGCAGTGGGAAAGGACA
ATTCGCGAAGCTGGCGAATCAAATCACGATCGCTACTACGATGGTTGGAT
TAGTGGAGGGAATGGTTTATGCTCACAAGGCAGGGCTAAATGTGGAATTA
TTTTTAAACGCCATATCAACGGGAGCTGCAGGTTCCAAGTCGCTGGACTT
GCA
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