CB293065

Overview
NameCB293065
Unique NameCB293065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293065 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.581e-37
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 1
Query:  130 MARCLFEAKLLLAPGADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSALGP 321
            MAR LF+AKLLLAP ADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSGASSA  P
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAP 64          

HSP 2 Score: 67.781 bits (164), Expect = 3.581e-37
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 2
Query:  314 WAPDPITGYYRPENPAGEIDPSELLEMLMNHKVRA 418
            WAPDPITGYYRPEN A EIDP+EL EML+NHKVRA
Sbjct:   62 WAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 96          
BLAST of CB293065 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.182e-14
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 2
Query:  314 WAPDPITGYYRPENPAGEIDPSELLEMLMNHKVRAR 421
            WAPDP+TGYYRPEN   EID +EL EML+NH+VR++
Sbjct:   70 WAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRSQ 105          

HSP 2 Score: 38.1206 bits (87), Expect = 2.182e-14
Identity = 24/63 (38.10%), Postives = 34/63 (53.97%), Query Frame = 1
Query:  130 MARCLFEAKLLLAPGADGISLSIGRRGYAAAAP---LGTISRTGIMEKNDLTPAVREDSGASS 309
            MAR +   KLL A   DG+ +SI RRGY+ A P     +  R G M K +   A++E S + +
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSET 63          
BLAST of CB293065 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.444e-12
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 2
Query:  314 WAPDPITGYYRPENPAGEIDPSELLEMLMNHKVRAR 421
            WAPDP+TGYYRPEN   EID ++L EM++NH+VR++
Sbjct:   70 WAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRSQ 105          

HSP 2 Score: 33.8834 bits (76), Expect = 1.444e-12
Identity = 22/63 (34.92%), Postives = 32/63 (50.79%), Query Frame = 1
Query:  130 MARCLFEAKLLLAPGADGISLSIGRRGYAAAAP---LGTISRTGIMEKNDLTPAVREDSGASS 309
            MAR +   K L A   D + +SI RRGY+ A P     +  R G M K +   A++E S + +
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSET 63          
The following BLAST results are available for this feature:
BLAST of CB293065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI3.581e-3789.06Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.182e-1469.44Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.444e-1263.89Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05ca11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ca11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293065 ID=CB293065; Name=CB293065; organism=Citrus sinensis; type=EST; length=609bp
GCCCTTGGAGCTAGCTTTTGCCTATAGCTACTGCAGGAGCAGACTCTTTC
TTCTTCTGTAGTAGCACTGTACAGAAACATCCCAGCTAGCTATCTTCATA
TCTATTAAGTTCTATAAGTAAATAAAACAATGGCCCGCTGTCTCTTCGAA
GCTAAGCTTCTTCTTGCTCCTGGTGCTGATGGCATCTCGCTCTCCATTGG
CAGGAGAGGATATGCTGCAGCAGCACCCTTGGGAACCATATCTCGGACTG
GTATCATGGAGAAGAATGATTTGACGCCTGCAGTGAGAGAGGATTCTGGG
GCCTCTTCTGCGCTGGGCCCCAGATCCCATCACTGGGTACTACAGGCCGG
AGAATCCGGCGGGCGAGATTGATCCATCAGAGCTTCTAGAGATGCTGATG
AACCACAAAGTCAGGGCACGCTAGGGAGTGGTCGCGCATATCAACAGATC
CTTTGCTGTTAGCGGAGCTTTAACTTTTAAGTGATGTTGTTACAGAAGCA
ATTTTGACTCACTCTAAAGTCTTTGCTGTTGTTATGATATCAACTGTTAT
TTACGACTTTTAATAGGGCATTTCCATGATTTTGTCTCTAAATAAATGAA
AACCGGGGG
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