CB293077

Overview
NameCB293077
Unique NameCB293077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: ZB14_MAIZE (14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 9.936e-52
Identity = 96/115 (83.48%), Postives = 106/115 (92.17%), Query Frame = 1
Query:    7 DSPTIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            DSPTIFDKII K+IPS VVYED+KVL+FRD+ PQAPTHILIIPKV DGLTGL+KAEERH EILG LLY AK+VAKQEGLEDG+R+VINDGP+G QSV+HIHVHLL GRQMNWPPG
Sbjct:   14 DSPTIFDKIIKKEIPSTVVYEDEKVLAFRDINPQAPTHILIIPKVKDGLTGLAKAEERHIEILGYLLYVAKVVAKQEGLEDGYRVVINDGPSGCQSVYHIHVHLLGGRQMNWPPG 128          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: ZB14_BRAJU (14 kDa zinc-binding protein (Fragment) OS=Brassica juncea PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.754e-48
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            TIF KII+K+IPS VVYEDDKVL+FRD+ PQ P HIL+IPKV DGLTGL KAEERH +ILGRLLYTAKLVAKQEGL++GFRIVINDGP G QSV+HIHVHL+ GRQMNWPPG
Sbjct:    2 TIFGKIISKEIPSTVVYEDDKVLAFRDITPQGPVHILLIPKVRDGLTGLFKAEERHIDILGRLLYTAKLVAKQEGLDEGFRIVINDGPQGCQSVYHIHVHLIGGRQMNWPPG 113          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: Y1390_SYNE7 (Uncharacterized HIT-like protein Synpcc7942_1390 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1390 PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.492e-31
Identity = 64/112 (57.14%), Postives = 81/112 (72.32%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            TIF KII ++IP+ +VYEDD  L+FRDV PQAP HIL+IPK    +  L +A   H  +LG LL T K +A QEGL +G+R VIN GP GGQ+V+H+H+HLL GR + WPPG
Sbjct:    5 TIFGKIIRREIPADIVYEDDLCLAFRDVAPQAPVHILVIPK--QPIANLLEATAEHQALLGHLLLTVKAIAAQEGLTEGYRTVINTGPAGGQTVYHLHIHLLGGRSLAWPPG 114          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT2_HUMAN (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Homo sapiens GN=HINT2 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.544e-31
Identity = 62/114 (54.39%), Postives = 84/114 (73.68%), Query Frame = 1
Query:   10 SPTIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            +PTIF +I++K +P+ ++YED + L FRDV PQAP H L+IPK    +  +S+AEE   ++LG LL  AK  AK EGL DG+R+VINDG  G QSV+H+H+H+L GRQ+ WPPG
Sbjct:   52 APTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPK--KPIPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG 163          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT2_BOVIN (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Bos taurus GN=HINT2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.323e-31
Identity = 61/114 (53.51%), Postives = 85/114 (74.56%), Query Frame = 1
Query:   10 SPTIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            +PTIF +I+++ +P+ ++YED + L+FRDV PQAP H L+IPK    +  +S+AEE   ++LG LL  AK  AK EGL DG+R+VINDG  G QSV+H+H+H+L GRQ+ WPPG
Sbjct:   52 APTIFSRILDRSLPADILYEDQQCLAFRDVAPQAPVHFLVIPK--KPIPRISQAEEEDQQLLGHLLLVAKETAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG 163          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT2_MOUSE (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Mus musculus GN=Hint2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 58/114 (50.88%), Postives = 86/114 (75.44%), Query Frame = 1
Query:   10 SPTIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            SPTIF +I+++ +P+ ++YED + L FRDV PQAP H L+IP+    +  +S+AEE   ++LG LL  AK +A+ +GL+DG+R+V+NDG  G QSV+H+H+H+L GRQ+ WPPG
Sbjct:   52 SPTIFSRILDRSLPADILYEDQQCLVFRDVAPQAPVHFLVIPR--KPIPRISQAEEDDQQLLGHLLLVAKKIAQAQGLKDGYRLVVNDGKMGAQSVYHLHIHVLGGRQLQWPPG 163          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT1_RABIT (Histidine triad nucleotide-binding protein 1 OS=Oryctolagus cuniculus GN=HINT1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 59/112 (52.68%), Postives = 85/112 (75.89%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            TIF KII K+IP+K+++EDD+ L+F D+ PQAPTH L+IPK +  ++ +S AE+    +LG L+   K  A   GL+ G+R+V+N+G +GGQSV+H+H+H+L GRQMNWPPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH--ISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT1_BOVIN (Histidine triad nucleotide-binding protein 1 OS=Bos taurus GN=HINT1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 60/112 (53.57%), Postives = 84/112 (75.00%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            TIF KII K+IP+K++YEDD+ L+F D+ PQAPTH L+IPK    ++ +S AE+    +LG L+   K  A   GL+ G+R+V+N+G +GGQSV+H+H+H+L GRQMNWPPG
Sbjct:   17 TIFGKIIRKEIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKY--ISQISAAEDDDESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT1_RAT (Histidine triad nucleotide-binding protein 1 OS=Rattus norvegicus GN=Hint1 PE=1 SV=5)

HSP 1 Score: 130.954 bits (328), Expect = 3.674e-30
Identity = 59/112 (52.68%), Postives = 85/112 (75.89%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            TIF KII K+IP+K+++EDD+ L+F D+ PQAPTH L+IPK +  ++ +S A++    +LG L+   K  A   GL+ G+R+V+N+G +GGQSV+HIH+H+L GRQMNWPPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVADDDDESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG 126          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT1_MOUSE (Histidine triad nucleotide-binding protein 1 OS=Mus musculus GN=Hint1 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 3.674e-30
Identity = 59/112 (52.68%), Postives = 85/112 (75.89%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            TIF KII K+IP+K+++EDD+ L+F D+ PQAPTH L+IPK +  ++ +S A++    +LG L+   K  A   GL+ G+R+V+N+G +GGQSV+HIH+H+L GRQMNWPPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVADDDDESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG 126          
The following BLAST results are available for this feature:
BLAST of CB293077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ZB14_MAIZE9.936e-5283.4814 kDa zinc-binding protein OS=Zea mays GN=ZBP14 P... [more]
ZB14_BRAJU1.754e-4881.2514 kDa zinc-binding protein (Fragment) OS=Brassica... [more]
Y1390_SYNE71.492e-3157.14Uncharacterized HIT-like protein Synpcc7942_1390 O... [more]
HINT2_HUMAN2.544e-3154.39Histidine triad nucleotide-binding protein 2, mito... [more]
HINT2_BOVIN3.323e-3153.51Histidine triad nucleotide-binding protein 2, mito... [more]
HINT2_MOUSE1.263e-3050.88Histidine triad nucleotide-binding protein 2, mito... [more]
HINT1_RABIT1.263e-3052.68Histidine triad nucleotide-binding protein 1 OS=Or... [more]
HINT1_BOVIN1.263e-3053.57Histidine triad nucleotide-binding protein 1 OS=Bo... [more]
HINT1_RAT3.674e-3052.68Histidine triad nucleotide-binding protein 1 OS=Ra... [more]
HINT1_MOUSE3.674e-3052.68Histidine triad nucleotide-binding protein 1 OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05cb06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cb06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293077 ID=CB293077; Name=CB293077; organism=Citrus sinensis; type=EST; length=540bp
CCTTCTGATTCGCCCACCATATTTGACAAAATAATTAACAAAAAAATCCC
ATCTAAAGTTGTTTATGAGGATGATAAGGTCTTATCCTTTAGGGACGTAG
AGCCCCAAGCTCCTACACACATTCTAATTATTCCCAAAGTGAATGATGGC
TTGACTGGACTTTCAAAGGCTGAGGAAAGGCATTGCGAAATTCTTGGCCG
CCTTCTTTACACTGCTAAGCTTGTTGCTAAACAGGAAGGACTAGAAGACG
GCTTTAGGATTGTGATTAATGATGGGCCAAATGGAGGTCAATCAGTTTTT
CACATCCACGTCCACCTCCTATGAGGACGACAAATGAACTGGCCCCCGGG
CTAAGATGAAGTATTTTGGGTGCCAAATTCTCTTATGAAAAAATGATTAC
GCCCTTTGTACTTTAATATGCATCAAGCTTCAAATAACAAATTACTTGGT
GGTTGCTCTGAACCACATTATTTGATATGATGTGAAATGACATTGTGCTG
GAAGGAGAAAAAGACCTTCAATAATAAGGGTGTGGTTTGT
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