CB293078

Overview
NameCB293078
Unique NameCB293078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB293078 vs. ExPASy Swiss-Prot
Match: YGI3_SCHPO (Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe GN=SPBC2A9.03 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.876e-23
Identity = 57/119 (47.90%), Postives = 74/119 (62.18%), Query Frame = -3 
Query:  442 HLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDLFGEIAGISFSPDTESLFVGVADRTYGSLLEFNR 798
            H D     +WHP+G ILA+G QDTT ++WDIR L +S   L   M A+  L F+  G  LA+ E ADFV +FDT+  +   Q ID FGEIAG ++S   +SLF+GV D   G +LEF R
Sbjct:  299 HSDSVLTGSWHPNGNILATGGQDTTAKVWDIRALGKSFRNLGSQMSAVTNLCFSPLGESLAVTEQADFVQLFDTKL-FNTSQVIDFFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRR 416
The following BLAST results are available for this feature:
BLAST of CB293078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YGI3_SCHPO1.876e-2347.90Uncharacterized WD repeat-containing protein C2A9.... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05cb07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293078 ID=CB293078; Name=CB293078; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTAAAAAAAAAAATCTCTCATTTTCCTTTTAATAT
GGGAGAAGAATATTACAGCAAAACTAAGAACCTAAGGCAAATGTTTTCTG
AACTGAAAAAGAACTTCATATTGTTTGATAAATGAATTAAACACATGCCA
TCTATAGATTATACAGCGTTCGCATGATATACACAGCGGCGACATTTATC
ACACTCCATTCCCGCCAGCTCAAAAAATCACCTTCACAGAAATAAATTTC
CTAAAGCCAAGACCTCTGTTGTAATTGCACCCTGCTTTCTATACTACACT
TGGGAGGAAATAAGGCAAAACCCCAAATTTCTAAAAACCTCACACTTTTA
AAAACAAAAAGTTCTACTGCATATACATATTTCCCAGGTCTTAAGCCTCA
TCCTATTAGAATATGGAGTCCAAATATTGGTTGTAATGCCTCCTGTTGAA
CTCCAATAAGCTTCCGTAGGTGCGATCAGCAACGCCAACAAATAGAGATT
CTGTGTCTGGGCTAAAGGATATTCCGGCAATCTCCCCAAATAGATCAATC
TCCTGGCACTTGACATATCCAGACTCTGTATCAAATACATGAACAAAGTC
TGCTGGCTCAGCCATTGCCAGAAACCGGCCGTCGGAGGTGAACTTGAGAG
CCCTAATGGCCCCCATATTTCCCTTCAACACAGTCAGGGACTGCGATAAG
TTCCTTATGTCCCACAGCCTGCAAGTAGTGTCTTGGTTCCCAGAGGCTAA
AATTCTTCCATCCGGGTGCCAGGCTGAAGCAAATGAGTAGTCCAAGTGTC
CTTTAA
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