CB293080

Overview
NameCB293080
Unique NameCB293080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:538..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293080 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 6.055e-56
Identity = 90/137 (65.69%), Postives = 108/137 (78.83%), Query Frame = -2
Query:  371 NSWGSSWGEGGYIRMEGNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 781
            NSWG SWGE GY+RME N+  + +GKCGIA+E SYP+KKG+N              P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  309 NSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CB293080 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.925e-55
Identity = 88/144 (61.11%), Postives = 110/144 (76.39%), Query Frame = -2
Query:  350 NSWGSSWGEGGYIRMEGNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 781
            NSWG SWGE GY+RM  N+A + +GKCGIA+E SYPIK G+N              P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  317 NSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CB293080 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.681e-46
Identity = 79/145 (54.48%), Postives = 99/145 (68.28%), Query Frame = -2
Query:  347 NSWGSSWGEGGYIRMEGNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 781
            NSWG++  E GY+R++ NV+ + +G CG+A+E SYP+K G N              P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  198 NSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CB293080 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.501e-43
Identity = 80/142 (56.34%), Postives = 92/142 (64.79%), Query Frame = -2
Query:  374 NSWGSSWGEGGYIRMEGNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 781
            NSWG  WGE GY+RME N+  T TGKCGIAM ASYP K G N              P       VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  322 NSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CB293080 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.360e-38
Identity = 72/141 (51.06%), Postives = 82/141 (58.16%), Query Frame = -2
Query:  371 NSWGSSWGEGGYIRMEGNVAGTLTGKCGIAMEASYPIKKGQNXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 781
            NSWG  WGE GYIRME NV    TGKCGIAM ASYPIKKG N                 CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  339 NSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CB293080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ORYA_ORYSJ6.055e-5665.69Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH3.925e-5561.11Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC5.681e-4654.48Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ4.501e-4356.34Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ4.360e-3851.06Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05cb08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cb08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293080 ID=CB293080; Name=CB293080; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTCATAAAAATCTTTAAATATCAATTCATACCCCTTT
CCGCTGAATGATGCCAGGGATTTGGTGGAGGACACCCTAAATAGATAACA
ACAATTTGTTTGTGCATTGTTCGGATTCAACGCAGATAGATAACTTACAA
CGCTATATACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACC
TGCCGGTACATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCC
GGGGAGAAACTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCT
TCCACTGCTCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCT
TGATTTCCATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCT
CACTCCCAATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACAT
TACAGATGGGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAG
GTGGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATA
CTCAAAGACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGT
CACACACAGCAGGAGGCTTTGTTGGAAATGGAGGAGACGGTCCGGGGTTG
GGAGGATTTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCC
ACACTTGCCCGTGAGAGTGCCAGCCACGTTACCCTCCATCCTAATATAGC
CACCCTCTCCCCAGCTACTGCCCCATGAATTC
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