CB293093

Overview
NameCB293093
Unique NameCB293093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13307 contig Csv1_Contig13307:1167..1912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293093 vs. ExPASy Swiss-Prot
Match: P2R3C_XENTR (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Xenopus tropicalis GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.327e-35
Identity = 84/216 (38.89%), Postives = 116/216 (53.70%), Query Frame = 2
Query:   98 EMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTQIFIERVFDEHVRRGKSGGGNAREMDFDNFLDFVLALENKDTPEGLTYLFRCLDLHERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDM 745
            ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP R GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y  GTLT +F++RVF E +           EMD+  +LDFVLALEN+  P  L Y+F+ LD+  +G L    ++  FR + ++    G   +  +DV+DEI+DM
Sbjct:  187 DLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACS---FLDDLLELRDEDLSKESQESNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTGTLTCVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGSLNVFSLNFFFRAIQEQMKIHGQEAVSFQDVKDEIFDM 392          
BLAST of CB293093 vs. ExPASy Swiss-Prot
Match: P2R3C_RAT (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Rattus norvegicus GN=Ppp2r3c PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.218e-34
Identity = 83/216 (38.43%), Postives = 115/216 (53.24%), Query Frame = 2
Query:   98 EMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTQIFIERVFDEHVRRGKSGGGNAREMDFDNFLDFVLALENKDTPEGLTYLFRCLDLHERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDM 745
            ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP R GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y   T+T +F++RVF E +           EMD+  +LDFVLALEN+  P  L Y+F+ LD+  +GYL    ++  FR + +     G   +  +DV+DEI+DM
Sbjct:  192 DLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACS---FLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDM 397          
BLAST of CB293093 vs. ExPASy Swiss-Prot
Match: P2R3C_MOUSE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Mus musculus GN=Ppp2r3c PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.218e-34
Identity = 83/216 (38.43%), Postives = 115/216 (53.24%), Query Frame = 2
Query:   98 EMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTQIFIERVFDEHVRRGKSGGGNAREMDFDNFLDFVLALENKDTPEGLTYLFRCLDLHERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDM 745
            ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP R GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y   T+T +F++RVF E +           EMD+  +LDFVLALEN+  P  L Y+F+ LD+  +GYL    ++  FR + +     G   +  +DV+DEI+DM
Sbjct:  192 DLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACS---FLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDM 397          
BLAST of CB293093 vs. ExPASy Swiss-Prot
Match: P2R3C_HUMAN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Homo sapiens GN=PPP2R3C PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.218e-34
Identity = 83/216 (38.43%), Postives = 115/216 (53.24%), Query Frame = 2
Query:   98 EMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTQIFIERVFDEHVRRGKSGGGNAREMDFDNFLDFVLALENKDTPEGLTYLFRCLDLHERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDM 745
            ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP R GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y   T+T +F++RVF E +           EMD+  +LDFVLALEN+  P  L Y+F+ LD+  +GYL    ++  FR + +     G   +  +DV+DEI+DM
Sbjct:  192 DLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACS---FLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDM 397          
BLAST of CB293093 vs. ExPASy Swiss-Prot
Match: P2R3C_BOVIN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Bos taurus GN=PPP2R3C PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.218e-34
Identity = 83/216 (38.43%), Postives = 115/216 (53.24%), Query Frame = 2
Query:   98 EMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTQIFIERVFDEHVRRGKSGGGNAREMDFDNFLDFVLALENKDTPEGLTYLFRCLDLHERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDM 745
            ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP R GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y   T+T +F++RVF E +           EMD+  +LDFVLALEN+  P  L Y+F+ LD+  +GYL    ++  FR + +     G   +  +DV+DEI+DM
Sbjct:  192 DLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACS---FLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDM 397          
BLAST of CB293093 vs. ExPASy Swiss-Prot
Match: P2R3C_DANRE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Danio rerio GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.714e-34
Identity = 82/216 (37.96%), Postives = 115/216 (53.24%), Query Frame = 2
Query:   98 EMEAYIRGLIPSLAQLRDMPTGFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCXXXXXXXXXXXXXXVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTQIFIERVFDEHVRRGKSGGGNAREMDFDNFLDFVLALENKDTPEGLTYLFRCLDLHERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDM 745
            ++E YI  LIP+L QL  +   F   Y   A  KFFFF DP   GK  I+ +L  +               ++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y  GTLT +F++RV+   +           EMD+  +LDFVLALEN+  P  L Y+F+ LD+  +GYL    ++  FR + ++    G   +  +DV+DEI+DM
Sbjct:  195 DLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLHTGKIKIQDILACS---FLDDLLELRDEELSKESQESNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTGTLTSVFLDRVYQACLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDMENKGYLNVFALNYFFRAIQEQMKIHGQEPVSFQDVKDEIFDM 400          
The following BLAST results are available for this feature:
BLAST of CB293093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
P2R3C_XENTR9.327e-3538.89Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_RAT1.218e-3438.43Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_MOUSE1.218e-3438.43Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_HUMAN1.218e-3438.43Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_BOVIN1.218e-3438.43Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_DANRE2.714e-3437.96Serine/threonine-protein phosphatase 2A regulatory... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_05cc05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293093 ID=CB293093; Name=CB293093; organism=Citrus sinensis; type=EST; length=746bp
GCTCTTTTTAGGGTTTCACTTACACAAGCCAGAATTGATATGACTTAGCT
TGATGAAGATTCTGATGGTTTCCTTCAACCTCATGTATGGACTATTTGAA
ATGGAGGCTTATATACGTGGTCTGATTCCTAGTCTGGCACAACTACGTGA
TATGCCAACAGGCTTTATTCAAATGTATTGTCGGATAGCTGCACACAAAT
TCTTCTTCTTTTGTGATCCCCACAGACGAGGAAAAGCCTGCATAAAGAAA
GTTCTGCTTAGTAATTGTCTCCAGGAACTAATGGAACTCCATCAGGAAAG
TGAGGAAGAAGTTACTGACACTGAACAAGCTGAAAATTGGTTTTCTTTGA
CATCTGCACAACGCGTATGCGACATGTTTATTGCCCTTGATAAGGATGCA
AATGGGACGTTGAGCAAGCAGGAGCTTCGAGAATACGCAGATGGGACACT
GACACAAATTTTCATTGAGAGGGTATTTGATGAGCATGTCCGACGTGGCA
AAAGTGGAGGAGGAAATGCTAGGGAGATGGACTTCGACAATTTCCTTGAC
TTTGTTCTGGCCTTAGAAAATAAAGATACTCCAGAAGGGTTAACATATTT
ATTTCGCTGTCTTGATCTTCATGAACGGGGATATCTCACTACAGCTGATA
TTCACTCTCTTTTCAGGGACGTGCATCAGAAATGGATTGAGGGTGGGAAC
TATGAACTATGTATTGAGGATGTGAGGGATGAAATCTGGGATATGG
back to top