CB293106

Overview
NameCB293106
Unique NameCB293106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5128 contig Csv1_Contig5128:554..1373. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293106 vs. ExPASy Swiss-Prot
Match: HYES_PIG (Epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.178e-12
Identity = 52/189 (27.51%), Postives = 90/189 (47.62%), Query Frame = -1
Query:  266 PRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPKPLCIPKDTGLSTL----PDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAPWTGVQIKVPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGAHIYEFIK 820
            P NP V P+   +A    DY +  FQEPG  E E  Q +  R  K F        L   +   L  L    P+  +L   ++EED+ +Y  +F + GF GP+N+YR  + NW+     +G +I +P   +  + DLV + K +K        + ++P+L+   + +   H+   +K  E+   + E+++
Sbjct:  364 PSNPNVSPMEIIKANPVFDYQLY-FQEPGVAEAELEQ-NLDRTFKNFFRAHDETFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKILIPALMVTAENDLVLHPKMSKH------MENWIPHLKRGHIKD-CGHWTQIDKPAELNRILIEWLE 543          
BLAST of CB293106 vs. ExPASy Swiss-Prot
Match: HYES_RAT (Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.637e-12
Identity = 51/190 (26.84%), Postives = 91/190 (47.89%), Query Frame = -1
Query:  266 PRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPKPLC-IPKDTGLSTL----PDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAPWTGVQIKVPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGAHIYEFIK 820
            P NP V P+   R++   +Y +  FQEPG  E E  + + +R  K F        L  + K T +  +    P+   +    +EE++ YY  +F + GF GP+N+YR  + NW+      G +I VP   +  ++D+V   + +K        + ++P+L+   + E   H+   EK  EV   + +++K
Sbjct:  362 PPNPEVSPMEVIRSIPVFNYQLY-FQEPGVAEAELEK-NMSRTFKSFFRTSDDMGLLTVNKATEMGGILVGTPEDPKVSKITTEEEIEYYIQQFKKSGFRGPLNWYRNTERNWKWSCKALGRKILVPALMVTAEKDIVLRPEMSK------NMENWIPFLKRGHI-EDCGHWTQIEKPAEVNQILIKWLK 542          
BLAST of CB293106 vs. ExPASy Swiss-Prot
Match: HYES_MOUSE (Epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 49/190 (25.79%), Postives = 92/190 (48.42%), Query Frame = -1
Query:  266 PRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPKP-LCIPKDTGLSTL----PDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAPWTGVQIKVPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGAHIYEFIK 820
            P +P V P+   R++   +Y +  FQEPG  E E  + + +R  K F         + + K T +  +    P+   L    +EE++ +Y  +F + GF GP+N+YR  + NW+      G +I VP   +  ++D+V   + +K        +K++P+L+   + E   H+   EK  EV   + ++++
Sbjct:  362 PPDPDVSPMKVIRSIPVFNYQLY-FQEPGVAEAELEK-NMSRTFKSFFRASDETGFIAVHKATEIGGILVNTPEDPNLSKITTEEEIEFYIQQFKKTGFRGPLNWYRNTERNWKWSCKGLGRKILVPALMVTAEKDIVLRPEMSK------NMEKWIPFLKRGHI-EDCGHWTQIEKPTEVNQILIKWLQ 542          
BLAST of CB293106 vs. ExPASy Swiss-Prot
Match: HYES_HUMAN (Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 48/188 (25.53%), Postives = 88/188 (46.81%), Query Frame = -1
Query:  269 PRNPAVRPLNNFRAVYGDDYYICRFQEPGEIEEEFAQIDTARLMKKFLCLRIPKPLCIPKDTGLSTL----PDPSALPSWLSEEDVNYYASKFNQKGFTGPVNYYRCWDLNWELMAPWTGVQIKVPVKYIVGDQDLVYNNKGTKEYIHNGGFKKYVPYLQDVVVMEGVAHFINQEKAEEVGAHIYEFI 820
            P NP + PL + +A    DY +  FQEPG  E E  Q + +R  K          L + K      L    P+  +L   ++EE++ +Y  +F + GF GP+N+YR  + NW+      G +I +P   +  ++D V   + ++        + ++P+L+   + E   H+   +K  EV   + +++
Sbjct:  364 PANPNMSPLESIKANPVFDYQLY-FQEPGVAEAELEQ-NLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQH------MEDWIPHLKRGHI-EDCGHWTQMDKPTEVNQILIKWL 542          
The following BLAST results are available for this feature:
BLAST of CB293106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HYES_PIG1.178e-1227.51Epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV... [more]
HYES_RAT7.637e-1226.84Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 ... [more]
HYES_MOUSE6.465e-1125.79Epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 ... [more]
HYES_HUMAN6.465e-1125.53Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05cd02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cd02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293106 ID=CB293106; Name=CB293106; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTTTTTTAATGGTATTATACATCTTCCATACATTCTCATT
CGAGTCCAAACGGACATATTCTTCATTTGTCTTAAATATGGCAAGTCCTA
CAACTACAACACATTTATTCAGAGACAAACAGAACAATACAAGATACATA
GGCTGGAGTAGGCCTAAACTGTTGGTATGGTGGAATTAATGAAACTTTAG
ATTGTAACTCTTATGGAGATGCATGGCATGCTGAGATGGTCAATGCCAAA
GCTCCATCAGAACTTCTTGATGAACTCATAGATGTGTGCACCAACTTCTT
CTGCCTTTTCTTGGTTGATAAAGTGAGCTACCCCTTCCATGACAACTACA
TCCTGCAGATATGGTACATATTTCTTGAAGCCACCATTGTGTATATATTC
CTTCGTACCTTTGTTGTTATAGACAAGATCCTGGTCACCCACGATATACT
TGACTGGTACTTTGATTTGTACCCCAGTCCATGGCGCCATCAGCTCCCAA
TTTAGATCCCAACATCGATAATAATTCACTGGTCCAGTGAAGCCTTTCTG
GTTAAATTTGGAGGCATAATAATTGACATCTTCTTCTGACAGCCAAGAGG
GCAACGCTGAAGGATCCGGTAGAGTACTGAGTCCTGTATCTTTGGGTATA
CAAAGTGGTTTTGGAATGCGCAAACACAGAAATTTCTTCATAAGTCTTGC
AGTATCAATCTGAGCAAACTCTTCTTCAATCTCTCCAGGTTCCTGAAATC
TGCAGATATAATAATCATCACCATAGACAGCCCTGAAGTTATTAAGAGGT
CTCACAGCCGGGTTTCTGGG
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