CB293110

Overview
NameCB293110
Unique NameCB293110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9120 contig Csv1_Contig9120:25..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293110 vs. ExPASy Swiss-Prot
Match: YKT61_ARATH (VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.862e-77
Identity = 133/157 (84.71%), Postives = 146/157 (92.99%), Query Frame = 3
Query:  111 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 581
            MKITALLVLKC P+ SDPV+L+ A DVSHFGYFQRSSVKEF++FV RTV  RTPP QRQSVQHEEYKVH+YNRNGLCA+GFMDDHYPVRS+FSLLNQVLDEYQK+FGESWR+A+ D+ QPWPYL EALNK+QDPAEADKLLKIQRELDETKIILHKT
Sbjct:    1 MKITALLVLKCAPEASDPVILSNASDVSHFGYFQRSSVKEFVVFVGRTVASRTPPSQRQSVQHEEYKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEYQKSFGESWRSAKEDSNQPWPYLTEALNKFQDPAEADKLLKIQRELDETKIILHKT 157          

HSP 2 Score: 28.1054 bits (61), Expect = 1.862e-77
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  577 KPIDSVLARGEKLD 618
            K IDSVLARGEKLD
Sbjct:  156 KTIDSVLARGEKLD 169          
BLAST of CB293110 vs. ExPASy Swiss-Prot
Match: YKT62_ARATH (VAMP-like protein YKT62 OS=Arabidopsis thaliana GN=YKT62 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 9.846e-64
Identity = 115/159 (72.33%), Postives = 138/159 (86.79%), Query Frame = 3
Query:  111 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQ--RSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 581
            MKITALLVLKC+P+  +PV+LA   D+S FG F   RS+ +EFI+F+ARTV +RTPPGQRQSV+HEEYKVH+YN NGLCA+GFMDDHYPVRS+FSLLNQVLD YQK++G++WR    ++ QPWPYL EA +K++DPAEADKLLKIQRELDETKIILHKT
Sbjct:    1 MKITALLVLKCDPETREPVILANVSDLSQFGKFSFYRSNFEEFIVFIARTVARRTPPGQRQSVKHEEYKVHAYNINGLCAVGFMDDHYPVRSAFSLLNQVLDVYQKDYGDTWRF--ENSSQPWPYLKEASDKFRDPAEADKLLKIQRELDETKIILHKT 157          

HSP 2 Score: 26.5646 bits (57), Expect = 9.846e-64
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  577 KPIDSVLARGEKLD 618
            K ID VLARGEKLD
Sbjct:  156 KTIDGVLARGEKLD 169          
BLAST of CB293110 vs. ExPASy Swiss-Prot
Match: YKT6_SCHPO (Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe GN=ykt6 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.269e-32
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  111 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 581
            MK+ ++ +L+ +P    PV +L TA D+S F +FQRSS+ EF+ F  +TV +RT PGQRQ V+   Y  H YNR +GLC +   D  YP+R +++LLN++LDE+  KN    W +        +P L+  L+KYQDP +AD ++++Q+ELDETK +LHKT
Sbjct:    1 MKLYSVSILRFDPK---PVQLLCTASDLSSFSFFQRSSIGEFMNFFTKTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESGAV--TLSFPELDTYLSKYQDPKQADTIMRVQQELDETKDVLHKT 155          

HSP 2 Score: 26.5646 bits (57), Expect = 4.269e-32
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  577 KPIDSVLARGEKLD 618
            K I+SVLARGEKLD
Sbjct:  154 KTIESVLARGEKLD 167          
BLAST of CB293110 vs. ExPASy Swiss-Prot
Match: YKT6_ASHGO (Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.445e-30
Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 3
Query:  111 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 581
            MKI ++ +L+ +  G+  + L +A D+S FG+F+R+ V +F+ F   TV  RT  GQRQS++   Y  H Y+R+ GLC +   D  YPVR +++LLN+VLDEY   +    WR  AQ  +      L   L KYQDP++AD ++++Q+ELDETKI+LHKT
Sbjct:    1 MKIYSIAILRNS--GNKALELCSAKDLSQFGFFERNGVSQFMTFFGETVAGRTGAGQRQSIEEGNYVGHVYSRSEGLCGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPAEWRDIAQTSDQLKLRELEMYLAKYQDPSQADSIMRVQQELDETKIVLHKT 158          

HSP 2 Score: 24.6386 bits (52), Expect = 6.445e-30
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  577 KPIDSVLARGEKLD 618
            K I+SVL RGEKLD
Sbjct:  157 KTIESVLQRGEKLD 170          
BLAST of CB293110 vs. ExPASy Swiss-Prot
Match: YKT6_YARLI (Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica GN=YKT6 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.412e-29
Identity = 69/160 (43.12%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  111 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTA-QADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 581
            MK+  + +L+  P+  + V LA+A D+S + +F+RS+V +   F+A TV  RT PGQRQSV+  +Y  H+Y R +GL  +   D  YPVR +++LLN+VL+EY  K+    W  A +A +    P L + + +YQDP +AD ++++Q+ELDETKI+LHKT
Sbjct:    1 MKLYYIGILR--PNKPEAVQLASASDLSSYSWFERSTVGQAFTFLAETVIPRTEPGQRQSVEENDYVGHAYLRSDGLGGVIITDQEYPVRVAYTLLNKVLEEYLTKHPKAEWENAKEASSKLAMPELEDYVKRYQDPHQADAIMRVQQELDETKIVLHKT 158          

HSP 2 Score: 25.409 bits (54), Expect = 2.412e-29
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  577 KPIDSVLARGEKLD 618
            K I+SVLARGE+LD
Sbjct:  157 KTIESVLARGERLD 170          
BLAST of CB293110 vs. ExPASy Swiss-Prot
Match: YKT6_CANGA (Synaptobrevin homolog YKT6 OS=Candida glabrata GN=YKT6 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.927e-29
Identity = 66/140 (47.14%), Postives = 93/140 (66.43%), Query Frame = 3
Query:  171 LATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTAQADN-MQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 581
            L    D+S FG+F+R+SV +F+ F A TV  RT  GQRQSV+   Y  H Y R+ G+C +   D  YPVR +++LLN+VLDEY   +  + W++  A N       L+  ++KYQDPA+AD ++K+Q+ELDETKI+LHKT
Sbjct:   24 LTEVKDLSQFGFFERNSVGQFMTFFAETVATRTTAGQRQSVEEGNYIGHVYARSEGICGVLITDKDYPVRPAYTLLNKVLDEYLVAHPADQWKSITATNDSLKMAELSTYISKYQDPAQADAIMKVQQELDETKIVLHKT 163          

HSP 2 Score: 23.483 bits (49), Expect = 6.927e-29
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  577 KPIDSVLARGEKLD 618
            K I++VL RGEKLD
Sbjct:  162 KTIENVLQRGEKLD 175          
BLAST of CB293110 vs. ExPASy Swiss-Prot
Match: YKT6_YEAST (Synaptobrevin homolog YKT6 OS=Saccharomyces cerevisiae GN=YKT6 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.175e-28
Identity = 64/146 (43.84%), Postives = 95/146 (65.07%), Query Frame = 3
Query:  153 GSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 581
            G   + L+   D+S FG+F+RSSV +F+ F A TV  RT  GQRQS++   Y  H Y R+ G+C +   D  YPVR +++LLN++LDEY   +  E W    + ++      L+  ++KYQDP++AD ++K+Q+ELDETKI+LHKT
Sbjct:   13 GEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQADAIMKVQQELDETKIVLHKT 158          

HSP 2 Score: 23.483 bits (49), Expect = 1.175e-28
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  577 KPIDSVLARGEKLD 618
            K I++VL RGEKLD
Sbjct:  157 KTIENVLQRGEKLD 170          
BLAST of CB293110 vs. ExPASy Swiss-Prot
Match: YKT6_DEBHA (Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.396e-28
Identity = 64/160 (40.00%), Postives = 100/160 (62.50%), Query Frame = 3
Query:  111 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTAQADNMQ-PWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 581
            MKI  + +L+    G   + L +A D+S F +F+R+ V +F+ F + TV +RT  GQRQS++   Y  H+Y R+ GL  +   D  YPVR +++L+N++L+EY   +  + W    A N    +  L   + KYQDP++AD ++K+Q+ELDETKI+LHKT
Sbjct:    1 MKIYYIGILRIG--GEKALELTSARDLSQFSFFERNGVSQFMTFFSETVSQRTQAGQRQSIEEGNYIGHTYTRSEGLACVIITDKEYPVRPAYTLINKILEEYLSLHPQKDWANISATNASFNYDNLEHYIKKYQDPSQADSIMKVQQELDETKIVLHKT 158          

HSP 2 Score: 24.6386 bits (52), Expect = 4.396e-28
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  577 KPIDSVLARGEKLD 618
            K I+SVL RGEKLD
Sbjct:  157 KTIESVLQRGEKLD 170          
BLAST of CB293110 vs. ExPASy Swiss-Prot
Match: YKT6_KLULA (Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis GN=YKT6 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.644e-27
Identity = 68/160 (42.50%), Postives = 102/160 (63.75%), Query Frame = 3
Query:  111 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 581
            MKI  + VL+ + D +  + L++  D+S FG+F+R+SV +F+ F + TV  RT  GQRQSV+   Y  H Y R  G+C +   D  YPVR +++LLN+VLDEY        W+   ++D+      L+  + KYQDP++AD ++++Q+ELDETKI LHKT
Sbjct:    1 MKIYYIGVLRNSDDKT--LELSSVKDLSQFGFFERNSVAQFMSFFSETVAGRTSAGQRQSVEEGNYVGHVYARPEGICGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPIQWKDVTESDDSLKLKELDIYIAKYQDPSQADAIMRVQQELDETKITLHKT 158          

HSP 2 Score: 24.2534 bits (51), Expect = 1.644e-27
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  562 RLSFIKPIDSVLARGEKLD 618
            +++  K I++VL RGEKLD
Sbjct:  152 KITLHKTIENVLQRGEKLD 170          
BLAST of CB293110 vs. ExPASy Swiss-Prot
Match: YKT6_BOVIN (Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.128e-26
Identity = 70/159 (44.03%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  111 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 581
            MK+ +L VL      S  V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D  YP R +F+LL +VLDE+ K      W T   D ++ +  L+  L++YQ+P EAD + K+Q ELDETKIILH T
Sbjct:    1 MKLYSLSVLYKGE--SKTVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRNDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPTGSPDTIR-YSGLDSQLSRYQNPREADPMTKVQAELDETKIILHNT 156          
The following BLAST results are available for this feature:
BLAST of CB293110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
YKT61_ARATH1.862e-7784.71VAMP-like protein YKT61 OS=Arabidopsis thaliana GN... [more]
YKT62_ARATH9.846e-6472.33VAMP-like protein YKT62 OS=Arabidopsis thaliana GN... [more]
YKT6_SCHPO4.269e-3245.00Synaptobrevin homolog ykt6 OS=Schizosaccharomyces ... [more]
YKT6_ASHGO6.445e-3043.75Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=Y... [more]
YKT6_YARLI2.412e-2943.13Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica ... [more]
YKT6_CANGA6.927e-2947.14Synaptobrevin homolog YKT6 OS=Candida glabrata GN=... [more]
YKT6_YEAST1.175e-2843.84Synaptobrevin homolog YKT6 OS=Saccharomyces cerevi... [more]
YKT6_DEBHA4.396e-2840.00Synaptobrevin homolog YKT6 OS=Debaryomyces hanseni... [more]
YKT6_KLULA1.644e-2742.50Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis... [more]
YKT6_BOVIN1.128e-2644.03Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05cd04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cd04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293110 ID=CB293110; Name=CB293110; organism=Citrus sinensis; type=EST; length=620bp
TCAAAGNTAGATCAAAAAAAACATAAAACCCTTTTTTATTTTTTTCTCTT
TTCAAAAAACCAAACGACGCCGAATCAGACGAACCGAACAACTTTCACAG
CACGAGGAGGATGAAGATCACGGCGTTACTGGTTTTGAAGTGCAACCCGG
ACGGATCGGATCCGGTTGTGTTAGCGACCGCCATGGACGTTAGCCATTTC
GGTTACTTTCAACGATCCAGCGTTAAGGAGTTCATCCTCTTCGTCGCTCG
CACTGTCGGTAAACGGACTCCGCCCGGCCAGCGCCAGTCCGTCCAACACG
AAGAGTACAAGGTGCATTCTTATAACAGGAATGGACTTTGCGCAATGGGA
TTCATGGATGATCATTATCCAGTGCGAAGCTCATTCTCTCTTCTCAACCA
GGTGCTAGATGAGTATCAGAAAAATTTTGGTGAATCATGGAGGACTGCAC
AGGCAGACAACATGCAACCGTGGCCTTATCTAAATGAAGCTTTGAACAAA
TATCAGGACCCAGCGGAGGCTGATAAGCTGTTGAAAATTCAGAGGGAATT
GGATGAAACAAAGATTATCCTTCATAAAACCTATCGATAGTGTACTTGCA
CGGGGTGAAAAGCTGGACAG
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