CB293119

Overview
NameCB293119
Unique NameCB293119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293119 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  462 TKEGSKADDELKKQRRPFLSQFFFPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVFGGIIGQALCTTAAVIGGKSLGFQIFEKIVALSGGVFFIVFGIQSF 779
            ++ G     +LK + R  ++  F P+F+KAF++TF  EWGD+SQ+ATI +AA +N +GV  G  +G A CT  AVI GK +  +I    V   GG+ FI FG+  F
Sbjct:  177 SRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGILFIAFGLVYF 282          
BLAST of CB293119 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.149e-18
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  453 FFFPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVFGGIIGQALCTTAAVIGGKSLGFQIFEKIVALSGGVFFIVFGIQS-FLSP 716
            F  PIF++A ++TF  EWGD+SQL TI LAA E+P+GV  GG +G  LCT  AVIGG+ +  +I  + V + GG+ F+ F   + F+SP
Sbjct:  231 FISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319          
BLAST of CB293119 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.149e-18
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  453 FFFPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVFGGIIGQALCTTAAVIGGKSLGFQIFEKIVALSGGVFFIVFGIQS-FLSP 716
            F  PIF++A ++TF  EWGD+SQL TI LAA E+P+GV  GG +G  LCT  AVIGG+ +  +I  + V + GG+ F+ F   + F+SP
Sbjct:  231 FISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319          
BLAST of CB293119 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.149e-18
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  453 FFFPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVFGGIIGQALCTTAAVIGGKSLGFQIFEKIVALSGGVFFIVFGIQS-FLSP 716
            F  PIF++A ++TF  EWGD+SQL TI LAA E+P+GV  GG +G  LCT  AVIGG+ +  +I  + V + GG+ F+ F   + F+SP
Sbjct:  232 FISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 320          
BLAST of CB293119 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = -1
Query:  450 IFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVFGGIIGQALCTTAAVIGGKSLGFQIFEKIVALSGGVFFIVFGIQSFLSPV 704
            I +++F++TF  EWGD++Q+ATI LAA  N +GV  G I+G  +C   AV+GGK +  +I EK V L GG+ F +F + S+ + +
Sbjct:  121 IVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTLIGGLLFYLFAVVSWWTKI 205          
BLAST of CB293119 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 31/88 (35.23%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  471 RPFLSQFFFPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVFGGIIGQALCTTAAVIGGKSLGFQIFEKIVALSGGVFFIVFGI 734
            R   S  F P++++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+C+  AV+GGK L  +I  + + L+  + F +F +
Sbjct:  182 RELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITLASSLLFFIFAL 269          
The following BLAST results are available for this feature:
BLAST of CB293119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
YD68_SCHPO4.657e-1942.45UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
TM165_RAT5.149e-1848.31Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE5.149e-1848.31Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
TM165_HUMAN5.149e-1848.31Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
Y615_SYNY35.329e-1543.53UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YB37_YEAST2.095e-1135.23UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05cd09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293119 ID=CB293119; Name=CB293119; organism=Citrus sinensis; type=EST; length=794bp
TTTTTTTTTTTTTTTTTCCAAAAAAACAAAATGCTGTTAAAACAATTTGA
TAAAAGTCATCTCACCTCTGACTAAAAACCAAACCAAACAATACTGGGAA
AAAATGATACAAAGCAATACAAAATGGGAAAAGCAAACTGCCAAAACAAA
AATTTACCTTATGGCATGCCTCAAATATCTCTTTTGAGATGGATTAAACA
ATAACTTATTTCAATGGAAAACAACAATGAGTGCAAAGGCCAAAAAATAA
TAATCAACTATTCAGTATGGTATAACCTATTGAATATTTTTAGTGACTTA
AACCAGTTTGCTTCTAGGCCATGCTTTCGTAATAATCATAATCACTGACT
TGGCTAATGATAAAGCTTTGAAAGTATCAGTGAAAAATATTCTTCAATTC
ACCGAATCAGCTTTCAATCCCACTAACATCATTGGGGGGATTATGACTTA
ACCGGCGAAAGGAAGGATTGAATTCCAAAAACAATGAAAAAAACTCCCCC
CGAAAGTGCGACTATTTTCTCAAATATCTGAAACCCCAAGCTCTTTCCTC
CAATGACAGCAGCAGTCGTACACAATGCTTGTCCTATAATTCCCCCAAAA
ACAACCCCAAATGGGTTCTCATCGGCAGCTAAACCAATGGTAGCTAACTG
GCTCTTGTCACCCCATTCACCAAAAAAAGTAATTGAAAATGCCTTCAAAA
AAATGGGAAAAAAAAACTGTGAAAGGAATGGCCGCCTTTGCTTTTTTAAT
TCATCATCAGCCTTGCTGCCCTCTTTGGTTGCTCCTGCATTTGC
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