CB293120
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33 Identity = 85/220 (38.64%), Postives = 128/220 (58.18%), Query Frame = 1 Query: 43 PSISKMSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGS-KADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHISEKIVAL 684 P+ + F ++++ ++SE+GDKTFF AAI+AMR+ R VL+G + AL +MT LS + G+A +I R T++++TVLF FG+ L + D G KK D +F+ G + + ++ +L F SPIF++A ++TF EWGD+SQL TI LAA E+P+GV +GG +G LCT AVIGG+ +A IS + V + Sbjct: 85 PATQTNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYAT-TVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTI 302
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32 Identity = 82/210 (39.05%), Postives = 123/210 (58.57%), Query Frame = 1 Query: 70 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHISEKIVAL 684 + F ++++ ++SE+GDKTFF AAI+AMR+ R VL+G + AL +MT LS + G+A +I R T++++T LF FG+ L + D G KK D +F+ + ++ +L F SPIF++A ++TF EWGD+SQL TI LAA E+P+GV +GG +G LCT AVIGG+ +A IS + V + Sbjct: 94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTI 301
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32 Identity = 82/210 (39.05%), Postives = 123/210 (58.57%), Query Frame = 1 Query: 70 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHISEKIVAL 684 + F ++++ ++SE+GDKTFF AAI+AMR+ R VL+G + AL +MT LS + G+A +I R T++++T LF FG+ L + D G KK D +F+ + ++ +L F SPIF++A ++TF EWGD+SQL TI LAA E+P+GV +GG +G LCT AVIGG+ +A IS + V + Sbjct: 94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTI 301
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30 Identity = 79/209 (37.80%), Postives = 114/209 (54.55%), Query Frame = 1 Query: 88 SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANA--------GA---------TKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHI 663 S++M EIGDKTF AA+LA + R V +G AL +MT+L ++G AAP L RKLT + VLF FG+ L +A + + + AN GA ++ G +LK + R ++ FSP+F+KAF++TF EWGD+SQ+ATI +AA +N +GV +G +G A CT AVI GK +++ I Sbjct: 53 SISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKI 261
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30 Identity = 82/206 (39.81%), Postives = 114/206 (55.34%), Query Frame = 1 Query: 67 VVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHISEKIVAL 684 ++ FT L + +SE+GDKTFF A ILAMR+PRR VL G +G L MTILS ++G L +R + ++ LF FG LWDA K A+ + A K + + +LK R + I +++F++TF EWGD++Q+ATI LAA N +GV G I+G +C AV+GGK +A ISEK V L Sbjct: 1 MLTAFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTRYI-NYAEVALFLIFGTKLLWDA------------RRIKATANLEEMEDAEKAIASGEKKLKIVPRGW------GIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTL 187
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28 Identity = 79/227 (34.80%), Postives = 120/227 (52.86%), Query Frame = 1 Query: 52 SKMSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGXXXXXXXXXKKL-------DADFKANAGATK-----EGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHISEKIVALS 687 S SS ++ F S++M LSEIGDKTF AA++AMRH R LV S +L +MTILS VVG +A +S + T +LF FG + D G +++ D D G T + + ++ + R S FSP++++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+C+ AV+GGK LA+ IS + + L+ Sbjct: 33 SGSSSHLKSFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAYDKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITLA 259
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: YLY5_SCHPO (UPF0016 membrane protein C186.05c OS=Schizosaccharomyces pombe GN=SPAC186.05c PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18 Identity = 67/214 (31.31%), Postives = 100/214 (46.73%), Query Frame = 1 Query: 70 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKL------DADFKANAGATKEGSKADDELKKQR----------RPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHI 663 VQ S++M + E+GDK+F A+LA ++ R V G AL MT + +VG AAP L + +TH + LF FG+ L ++ K+ + D K S K + + S+ FS F+KAF++ F E GD+SQ+ATI ++A E V +G IG LCT AVI G+ +++ I Sbjct: 24 VQNIGMSISMIIGCELGDKSFIVTALLAYQYGRASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSITHILGGTLFLIFGVKMLKESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKKFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAVIVGRYISNKI 237 The following BLAST results are available for this feature:
BLAST of CB293120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB293120 ID=CB293120; Name=CB293120; organism=Citrus sinensis; type=EST; length=687bpback to top |