CB293120

Overview
NameCB293120
Unique NameCB293120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2052 contig Csv1_Contig2052:21..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 85/220 (38.64%), Postives = 128/220 (58.18%), Query Frame = 1
Query:   43 PSISKMSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGS-KADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHISEKIVAL 684
            P+       +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++TVLF  FG+  L +      D G           KK D +F+        G  +    +   ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A  IS + V +
Sbjct:   85 PATQTNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYAT-TVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTI 302          
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32
Identity = 82/210 (39.05%), Postives = 123/210 (58.57%), Query Frame = 1
Query:   70 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHISEKIVAL 684
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++T LF  FG+  L +      D G           KK D +F+          +        ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A  IS + V +
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTI 301          
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32
Identity = 82/210 (39.05%), Postives = 123/210 (58.57%), Query Frame = 1
Query:   70 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHISEKIVAL 684
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++T LF  FG+  L +      D G           KK D +F+          +        ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A  IS + V +
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTI 301          
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30
Identity = 79/209 (37.80%), Postives = 114/209 (54.55%), Query Frame = 1
Query:   88 SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANA--------GA---------TKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHI 663
            S++M    EIGDKTF  AA+LA  + R  V +G   AL +MT+L  ++G AAP L  RKLT  +  VLF  FG+  L +A              + +  +  AN         GA         ++ G     +LK + R  ++  FSP+F+KAF++TF  EWGD+SQ+ATI +AA +N +GV +G  +G A CT  AVI GK +++ I
Sbjct:   53 SISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKI 261          
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 82/206 (39.81%), Postives = 114/206 (55.34%), Query Frame = 1
Query:   67 VVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHISEKIVAL 684
            ++  FT  L +  +SE+GDKTFF A ILAMR+PRR VL G +G L  MTILS ++G     L +R + ++    LF  FG   LWDA               K  A+ +    A K  +  + +LK   R +       I +++F++TF  EWGD++Q+ATI LAA  N +GV  G I+G  +C   AV+GGK +A  ISEK V L
Sbjct:    1 MLTAFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTRYI-NYAEVALFLIFGTKLLWDA------------RRIKATANLEEMEDAEKAIASGEKKLKIVPRGW------GIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTL 187          
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 79/227 (34.80%), Postives = 120/227 (52.86%), Query Frame = 1
Query:   52 SKMSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGXXXXXXXXXKKL-------DADFKANAGATK-----EGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHISEKIVALS 687
            S  SS ++ F  S++M  LSEIGDKTF  AA++AMRH R LV S    +L +MTILS VVG +A   +S + T     +LF  FG     +      D G         +++       D D     G T      + +    ++  + R   S  FSP++++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+C+  AV+GGK LA+ IS + + L+
Sbjct:   33 SGSSSHLKSFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAYDKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITLA 259          
BLAST of CB293120 vs. ExPASy Swiss-Prot
Match: YLY5_SCHPO (UPF0016 membrane protein C186.05c OS=Schizosaccharomyces pombe GN=SPAC186.05c PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.815e-18
Identity = 67/214 (31.31%), Postives = 100/214 (46.73%), Query Frame = 1
Query:   70 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKL------DADFKANAGATKEGSKADDELKKQR----------RPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASHI 663
            VQ    S++M +  E+GDK+F   A+LA ++ R  V  G   AL  MT  + +VG AAP L  + +TH +   LF  FG+  L ++               K+      + D K         S       K +          +   S+ FS  F+KAF++ F  E GD+SQ+ATI ++A E    V +G  IG  LCT  AVI G+ +++ I
Sbjct:   24 VQNIGMSISMIIGCELGDKSFIVTALLAYQYGRASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSITHILGGTLFLIFGVKMLKESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKKFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAVIVGRYISNKI 237          
The following BLAST results are available for this feature:
BLAST of CB293120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM165_HUMAN5.811e-3338.64Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
TM165_RAT1.295e-3239.05Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE1.295e-3239.05Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
YD68_SCHPO1.582e-3037.80UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
Y615_SYNY34.604e-3039.81UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YB37_YEAST5.628e-2834.80UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
YLY5_SCHPO1.815e-1831.31UPF0016 membrane protein C186.05c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05cd09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293120 ID=CB293120; Name=CB293120; organism=Citrus sinensis; type=EST; length=687bp
GCCCTTTTAGGCACGAGGCTTATAGTGACTCTCTCTGTTCGTCCTAGCAT
ATCAAAGATGAGCTCAGTTGTGCAGGGTTTTACCAAGTCGCTTGCCATGA
CTGTTCTATCTGAGATCGGCGACAAGACGTTTTTTGCCGCTGCGATCTTG
GCAATGCGTCACCCGCGGAGACTGGTCTTGTCAGGTTGCCTGGGAGCTTT
GATTGTGATGACTATTCTTTCTGCTGTTGTTGGCTGGGCCGCTCCAAATC
TGATCTCTCGTAAATTGACTCATCATATAACAACAGTGCTGTTCTTTGGA
TTTGGTCTATGGTCTTTATGGGATGCCTTTAGTGATGGAGGGGAGGCTGA
AGAATTTGAAGAAGTTGAAAAAAAGCTGGATGCTGACTTTAAAGCAAATG
CAGGAGCAACCAAAGAGGGCAGCAAGGCTGATGATGAATTAAAAAAGCAA
AGGCGGCCATTCCTCTCACAGTTCTTCTCTCCCATCTTTTTGAAGGCATT
TTCAATTACTTTCTTTGGTGAATGGGGTGACAAGAGCCAGTTAGCTACCA
TTGGTTTAGCTGCCGATGAGAACCCATTTGGCGTTGTTCTTGGCGGAATT
ATAGGACAAGCATTGTGTACGACTGCTGCTGTCATTGGAGGAAAGAGCTT
GGCGTCTCACATATCTGAGAAAATAGTCGCACTCTCG
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