CB293158

Overview
NameCB293158
Unique NameCB293158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:96..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 369.777 bits (948), Expect = 9.376e-102
Identity = 193/237 (81.43%), Postives = 206/237 (86.92%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQRWLP 722
            +LKRIENKIN   TFAKRRNGLLKKAYELSVLCDAE ALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPE N+S REALE+SSQQEYLKLKARYEALQRSQRNLLGE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQRLMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM  WLP
Sbjct:    7 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 4.507e-96
Identity = 184/242 (76.03%), Postives = 205/242 (84.71%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA--LELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGL-KPAQPQGDTFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQRWLP 722
            +LKR+ENKIN   TFAKRRNGLLKKAYELSVLCDAE ALI+FSNRGKLYEFCS+SSMLKTLERYQKCNYGAPE NV+++EA  LELSSQQEYLKLKARYE+LQRSQRNL+GE+LGPL+SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM  WLP
Sbjct:    7 ELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR-MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.517e-88
Identity = 176/242 (72.73%), Postives = 197/242 (81.40%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQRWLP 722
            +LKRIENKIN   TFAKRRNGLLKKAYELSVLCDAE ALIIFSNRGKLYEFCSSSSML+TLERYQKCNYGAPEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGE+LGPL++KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ E+   YG    Q Q     FF  LECEP LQIGYQ       + AGPS+NNYM  WLP
Sbjct:    7 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.479e-86
Identity = 173/244 (70.90%), Postives = 196/244 (80.33%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDT---FFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQRWLP 722
            +LKRIENKIN   TFAKRRNGLLKKAYELSVLCDAE ALIIFSNRGKLYEFCSSSSM++TLERYQKCNYG PEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGE+LGPL++KELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ ED    YG    Q Q ++   FF  LECEP LQ+GYQ       + AGPS NNYM  WLP
Sbjct:    7 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.292e-82
Identity = 152/174 (87.36%), Postives = 160/174 (91.95%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 533
            +LKRIE KIN   TFAKRRNGLLKKAYELSVLCDAE ALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPN+S REALE+SSQQEYLKLK RYEALQRSQRNLLGE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQRLMEG Q+N
Sbjct:    7 ELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGSQLN 180          

HSP 2 Score: 29.261 bits (64), Expect = 9.292e-82
Identity = 15/31 (48.39%), Postives = 18/31 (58.06%), Query Frame = 1
Query:  553 VQKIVVMGLNQLNLRAIPSFTPWNVNPHCKL 645
            + K+  M   QL LRA+ SF  W VN  CKL
Sbjct:  186 MHKLWAMAGKQLKLRAMASFILWIVNLLCKL 216          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.032e-80
Identity = 161/234 (68.80%), Postives = 184/234 (78.63%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYM 707
            +LK IENKIN   TFAKRR  LLKKAYELSVLCDAE ALIIFSNRGKLYEFCSS+SMLKTLE+YQKCN+G+PE  + +RE    SSQQEYLKLK R EALQRSQRNLLGE+LGPL SKELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R  E  Q N  Q+ +PS     GYG +PAQ  G+ F+H LECEPTLQIGY     ++  TA  ++NNYM
Sbjct:    7 ELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQKCNFGSPESTIISRETQ--SSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYM 237          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 1.046e-68
Identity = 147/245 (60.00%), Postives = 178/245 (72.65%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALEL-SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPSAEDCGYGLKPAQPQ----GDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQRWLP 722
            +LKRIENKIN   TFAKRRNGLLKKAYELSVLCDAE ALIIFSNRGKLYEFCS+ SM KTLE+YQKC+Y  PE  V  RE+ +L +S+ EYLKLKAR E LQR+QRNLLGE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+        GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:    7 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 1.046e-68
Identity = 147/245 (60.00%), Postives = 178/245 (72.65%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALEL-SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPSAEDCGYGLKPAQPQ----GDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQRWLP 722
            +LKRIENKIN   TFAKRRNGLLKKAYELSVLCDAE ALIIFSNRGKLYEFCS+ SM KTLE+YQKC+Y  PE  V  RE+ +L +S+ EYLKLKAR E LQR+QRNLLGE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+        GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:    7 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 5.193e-68
Identity = 145/247 (58.70%), Postives = 175/247 (70.85%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSA------EDCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQRWL 719
            +LKRIENKIN   TFAKRRNGLLKKAYELSVLCDAE ALIIFSNRGKLYEFCSSS+MLKTL+RYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGE+LGPLNSKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L  +L +   V +  +          ++  Y    AQ QG   +  LEC PTLQ+GY     ++ I+  T   +   N Y+  W+
Sbjct:    7 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVTYAHHQAQSQG--LYQPLECNPTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWM 250          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.782e-68
Identity = 144/246 (58.54%), Postives = 175/246 (71.14%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAE-----DCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQRWL 719
            +LKRIENKIN   TFAKRRNGLLKKAYELSVLCDAE +LI+FSNRGKLYEFCS+S+MLKTLERYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGE+LGPLNSKELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +L +   V    +    E     +  YG   A  QG   + +LEC+PTLQIGY     ++ ++V   G S   N Y+  W+
Sbjct:    7 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGGGWEGGDQQNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249          
The following BLAST results are available for this feature:
BLAST of CB293158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
AGL9_PETHY9.376e-10281.43Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA4.507e-9676.03MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP3_ARATH4.517e-8872.73Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_SINAL2.479e-8670.90Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_SOLLC9.292e-8287.36Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
AGL9_ARADE2.032e-8068.80Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
MADS7_ORYSJ1.046e-6860.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI1.046e-6860.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]
SEP1_ARATH5.193e-6858.70Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
SEP2_ARATH6.782e-6858.54Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05cf06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cf06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293158 ID=CB293158; Name=CB293158; organism=Citrus sinensis; type=EST; length=770bp
GTCGTTAAAGTGACTTGAAGAGGATAGAGAACAAGATCAACACCCTAGAG
ACCTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTC
CGTTCTTTGTGATGCTGAGGATGCTCTCATCATTTTCTCCAATAGAGGAA
AGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGG
TACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCAAGGGA
GGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGCACGAT
ATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGC
CCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTC
ATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACCCTTA
CTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGACCCTC
AAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATCC
TAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCG
ATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGATAC
CAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAATAA
TTACATGCAAAGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCAGT
CAATGTATTGCAGTTGATCC
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