CB293176
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2) HSP 1 Score: 198.749 bits (504), Expect = 2.641e-50 Identity = 101/128 (78.91%), Postives = 108/128 (84.38%), Query Frame = 2 Query: 362 NAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLS---NTRLVTQPSCIQGKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736 NA+IDADMNN+GKGRLKYLLQQTELF+HFAK D S+SQKKAKGRGRHASK+T DGL+ NTRL+TQPSCIQGKMRDY LAGLNWLIRLYENGINGILADEMGLGKTLQTISLL Y Sbjct: 103 NASIDADMNNKGKGRLKYLLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEEDEEYLKEEEDGLTGSGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAY 230
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 2.313e-46 Identity = 94/128 (73.44%), Postives = 106/128 (82.81%), Query Frame = 2 Query: 362 NAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSN---TRLVTQPSCIQGKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736 NAA+DADMNN+GKGRLKYLLQQTE+F+HFAKG+QS +KK +GRGRHASK+T D L+ TRL++QPSCI+GKMRDY LAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY Sbjct: 146 NAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQS-KEKKPRGRGRHASKMTEEEEDEEYLKEEEDALAGSGGTRLLSQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 272
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19 Identity = 60/136 (44.12%), Postives = 75/136 (55.15%), Query Frame = 2 Query: 371 IDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGR-------------HASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQ-GKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736 I+AD + R +LL+QTE+F+HF + + S K KGR + H + T R P+ I+ G+MRDY + GLNW+I LYENGINGILADEMGLGKTLQTISLLGY Sbjct: 39 IEADRSRR----FDFLLKQTEIFTHFMT-NSAKSPTKPKGRPKKIKDKDKEKDVADHRHRKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGY 169
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18 Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 2 Query: 404 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736 R +YLL+QTELF+HF A+ ++ K GR G + + T + TR PS ++ GK+RDY + GLNWLI LYENGINGILADEMGLGKTLQTISLLGY Sbjct: 90 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGY 220
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18 Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 2 Query: 404 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736 R +YLL+QTELF+HF A+ ++ K GR G + + T + TR PS ++ GK+RDY + GLNWLI LYENGINGILADEMGLGKTLQTISLLGY Sbjct: 91 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGY 221
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16 Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 2 Query: 404 RLKYLLQQTELFSHFAKGDQSAS------QKKAKGRGRHASKLTXXXXXXXXXXXXXDG-----LSNTRLVTQ--------PSCIQG-KMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736 R ++LL+QTELF+HF + S K A+ R + K + LS +R + PS ++G +RDY + GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGY Sbjct: 98 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGY 228
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16 Identity = 57/131 (43.51%), Postives = 74/131 (56.49%), Query Frame = 2 Query: 404 RLKYLLQQTELFSHF----AKGDQSASQKKAKGRGR-----HASKLTXXXXXXXXXXXXXDG--LSNTRLVTQ--------PSCIQG-KMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736 R ++LL+QTELF+HF A+ ++ GR R S ++ D LS +R + PS ++G +RDY + GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGY Sbjct: 94 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGY 224
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: INO80_ASPTN (Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14 Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 2 Query: 581 VTQPSCIQGKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736 ++QPS + K+++Y L GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ Y Sbjct: 808 ISQPSMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAY 859
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14 Identity = 54/136 (39.71%), Postives = 67/136 (49.26%), Query Frame = 2 Query: 404 RLKYLLQQTELFSHF----AKGDQ----------------SASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSNTR----LVTQPSCIQ-GKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736 R KYLL T+LF HF AK D+ S S RH K + + + + PS ++ GK+RDY + GLNWLI L+EN ++GILADEMGLGKTLQTIS LGY Sbjct: 90 RFKYLLGVTDLFRHFIGIKAKHDKNIQKLLKQLDSDANKLSKSHSTVSSSSRHHRKTEKEEDAELMADEEEEIVDTYQEDIFVSESPSFVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGY 225
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14 Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2 Query: 581 VTQPSCIQGKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736 ++QP+ + K+++Y L GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ Y Sbjct: 788 ISQPTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAY 839 The following BLAST results are available for this feature:
BLAST of CB293176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CB293176 ID=CB293176; Name=CB293176; organism=Citrus sinensis; type=EST; length=738bpback to top |