CB293176

Overview
NameCB293176
Unique NameCB293176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.641e-50
Identity = 101/128 (78.91%), Postives = 108/128 (84.38%), Query Frame = 2
Query:  362 NAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLS---NTRLVTQPSCIQGKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736
            NA+IDADMNN+GKGRLKYLLQQTELF+HFAK D S+SQKKAKGRGRHASK+T             DGL+   NTRL+TQPSCIQGKMRDY LAGLNWLIRLYENGINGILADEMGLGKTLQTISLL Y
Sbjct:  103 NASIDADMNNKGKGRLKYLLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEEDEEYLKEEEDGLTGSGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAY 230          
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.313e-46
Identity = 94/128 (73.44%), Postives = 106/128 (82.81%), Query Frame = 2
Query:  362 NAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSN---TRLVTQPSCIQGKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736
            NAA+DADMNN+GKGRLKYLLQQTE+F+HFAKG+QS  +KK +GRGRHASK+T             D L+    TRL++QPSCI+GKMRDY LAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY
Sbjct:  146 NAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQS-KEKKPRGRGRHASKMTEEEEDEEYLKEEEDALAGSGGTRLLSQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 272          
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 60/136 (44.12%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  371 IDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGR-------------HASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQ-GKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736
            I+AD + R      +LL+QTE+F+HF   + + S  K KGR +             H  + T                   R    P+ I+ G+MRDY + GLNW+I LYENGINGILADEMGLGKTLQTISLLGY
Sbjct:   39 IEADRSRR----FDFLLKQTEIFTHFMT-NSAKSPTKPKGRPKKIKDKDKEKDVADHRHRKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGY 169          
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  404 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736
            R +YLL+QTELF+HF    A+   ++  K   GR              G +  + T                +  TR    PS ++ GK+RDY + GLNWLI LYENGINGILADEMGLGKTLQTISLLGY
Sbjct:   90 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGY 220          
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  404 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736
            R +YLL+QTELF+HF    A+   ++  K   GR              G +  + T                +  TR    PS ++ GK+RDY + GLNWLI LYENGINGILADEMGLGKTLQTISLLGY
Sbjct:   91 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGY 221          
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 2
Query:  404 RLKYLLQQTELFSHFAKGDQSAS------QKKAKGRGRHASKLTXXXXXXXXXXXXXDG-----LSNTRLVTQ--------PSCIQG-KMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736
            R ++LL+QTELF+HF +     S       K A+ R +   K +                    LS +R  +         PS ++G  +RDY + GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGY
Sbjct:   98 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGY 228          
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 57/131 (43.51%), Postives = 74/131 (56.49%), Query Frame = 2
Query:  404 RLKYLLQQTELFSHF----AKGDQSASQKKAKGRGR-----HASKLTXXXXXXXXXXXXXDG--LSNTRLVTQ--------PSCIQG-KMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736
            R ++LL+QTELF+HF    A+   ++      GR R       S ++             D   LS +R  +         PS ++G  +RDY + GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGY
Sbjct:   94 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGY 224          
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: INO80_ASPTN (Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  581 VTQPSCIQGKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736
            ++QPS +  K+++Y L GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ Y
Sbjct:  808 ISQPSMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAY 859          
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 54/136 (39.71%), Postives = 67/136 (49.26%), Query Frame = 2
Query:  404 RLKYLLQQTELFSHF----AKGDQ----------------SASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSNTR----LVTQPSCIQ-GKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736
            R KYLL  T+LF HF    AK D+                S S        RH  K               + +   +    +   PS ++ GK+RDY + GLNWLI L+EN ++GILADEMGLGKTLQTIS LGY
Sbjct:   90 RFKYLLGVTDLFRHFIGIKAKHDKNIQKLLKQLDSDANKLSKSHSTVSSSSRHHRKTEKEEDAELMADEEEEIVDTYQEDIFVSESPSFVKSGKLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGY 225          
BLAST of CB293176 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  581 VTQPSCIQGKMRDYHLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 736
            ++QP+ +  K+++Y L GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ Y
Sbjct:  788 ISQPTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAY 839          
The following BLAST results are available for this feature:
BLAST of CB293176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ISW2_ARATH2.641e-5078.91Putative chromatin-remodeling complex ATPase chain... [more]
ISW2_ORYSJ2.313e-4673.44Probable chromatin-remodeling complex ATPase chain... [more]
ISWI_DROME9.161e-1944.12Chromatin-remodeling complex ATPase chain Iswi OS=... [more]
SMCA5_MOUSE2.041e-1845.80SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA5_HUMAN2.041e-1845.80SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA1_MOUSE1.120e-1642.75Probable global transcription activator SNF2L1 OS=... [more]
SMCA1_HUMAN2.495e-1643.51Probable global transcription activator SNF2L1 OS=... [more]
INO80_ASPTN3.050e-1463.46Putative DNA helicase ino80 OS=Aspergillus terreus... [more]
ISW2_YEAST3.983e-1439.71ISWI chromatin-remodeling complex ATPase ISW2 OS=S... [more]
INO80_EMENI6.794e-1461.54Putative DNA helicase ino80 OS=Emericella nidulans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05cg04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293176 ID=CB293176; Name=CB293176; organism=Citrus sinensis; type=EST; length=738bp
GCCCGTTGATCGTTTTGAGGAAAAATATTCAAAGAGCGCAATGCCTAAAC
CCTCGAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAATGGCTCCAGT
TCGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGAGGA
GGAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACGATA
ACTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTTGAA
GAGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAAGCA
GAGACTAAAAGAAATGCTGAAATTGAAGAAACAAAAGATTCAGGAACTAT
TGGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGGAAG
GGCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTTTGC
GAAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGACGCC
ATGCATCTAAACTCACTGAAGAGGAAGAAGATGAATAATACCTCCAGGAA
GAAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTGTAT
TCAGGGAAAAATGAGGGATTACCACCTTGCTGGATTGAACTGGCTTATAC
GGTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGGCTT
GGTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCT
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