CB293178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_RAT (RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36 Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 2 Query: 191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571 KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F GP G Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_HUMAN (RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36 Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 2 Query: 191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571 KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F GP G Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_BOVIN (RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36 Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 2 Query: 191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571 KK KGRGF E S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F GP G Sbjct: 33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_XENTR (RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36 Identity = 72/128 (56.25%), Postives = 97/128 (75.78%), Query Frame = 2 Query: 191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571 KK KGRGF AD +R+ + +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA A+ +NG +L+ Q ++VDW F GP G Sbjct: 33 KKRKGRGFG--ADEGTRARIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFVRGPPKG 157
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_MOUSE (RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3) HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36 Identity = 70/128 (54.69%), Postives = 93/128 (72.66%), Query Frame = 2 Query: 191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571 KK KGRGF + S R +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+ +NG +L+ Q ++VDW F GP G Sbjct: 33 KKRKGRGFGSKEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RB8AB_XENLA (RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-B PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36 Identity = 72/128 (56.25%), Postives = 97/128 (75.78%), Query Frame = 2 Query: 191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571 KK KGRGF AD +R+ + +++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA A+ +NG +L+ Q ++VDW F GP G Sbjct: 33 KKRKGRGFG--ADEGTRTRIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG 157
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_DANRE (RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35 Identity = 70/125 (56.00%), Postives = 93/125 (74.40%), Query Frame = 2 Query: 191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 562 KK KGRGF E + R +++++ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+ +NG EL+ Q ++VDW F GP Sbjct: 33 KKRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGP 154
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RB8AA_XENLA (RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-A PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35 Identity = 72/128 (56.25%), Postives = 96/128 (75.00%), Query Frame = 2 Query: 191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571 KK KGRGF AD +R+ + ++S+ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA A+ +NG +L+ Q ++VDW F GP G Sbjct: 33 KKRKGRGFG--ADEGTKTRIREV-YDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG 157
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_SALSA (RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.371e-34 Identity = 67/125 (53.60%), Postives = 93/125 (74.40%), Query Frame = 2 Query: 191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 562 K+ KGRGF E + R +++++ DG PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+ +NG +++ Q ++VDW F GP Sbjct: 33 KRRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQDMMGQPISVDWGFVRGP 154
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_DROME (RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.283e-32 Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 2 Query: 191 KKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 562 K KGRGF ++++ +R + PGPQRS+EGWI+ VT +HEEAQED++Q F +YGEI+N+HLNLDRRTGF KGYAL+EYE ++A A A+NG E++ QT+ VDW F GP Sbjct: 31 KHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 The following BLAST results are available for this feature:
BLAST of CB293178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CB293178 ID=CB293178; Name=CB293178; organism=Citrus sinensis; type=EST; length=686bpback to top |