CB293178

Overview
NameCB293178
Unique NameCB293178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13418 contig Csv1_Contig13418:81..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_RAT (RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 2
Query:  191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571
            KK KGRGF  E  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_HUMAN (RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 2
Query:  191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571
            KK KGRGF  E  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_BOVIN (RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 2
Query:  191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571
            KK KGRGF  E  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_XENTR (RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36
Identity = 72/128 (56.25%), Postives = 97/128 (75.78%), Query Frame = 2
Query:  191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571
            KK KGRGF   AD    +R+ + +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFG--ADEGTRARIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFVRGPPKG 157          
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_MOUSE (RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 70/128 (54.69%), Postives = 93/128 (72.66%), Query Frame = 2
Query:  191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571
            KK KGRGF  +  S    R    +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSKEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RB8AB_XENLA (RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-B PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.495e-36
Identity = 72/128 (56.25%), Postives = 97/128 (75.78%), Query Frame = 2
Query:  191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571
            KK KGRGF   AD    +R+ + +++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFG--ADEGTRTRIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG 157          
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_DANRE (RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 70/125 (56.00%), Postives = 93/125 (74.40%), Query Frame = 2
Query:  191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 562
            KK KGRGF  E  +    R    +++++  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+  +NG EL+ Q ++VDW F  GP
Sbjct:   33 KKRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGP 154          
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RB8AA_XENLA (RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-A PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 72/128 (56.25%), Postives = 96/128 (75.00%), Query Frame = 2
Query:  191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 571
            KK KGRGF   AD    +R+ +  ++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFG--ADEGTKTRIREV-YDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG 157          
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_SALSA (RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.371e-34
Identity = 67/125 (53.60%), Postives = 93/125 (74.40%), Query Frame = 2
Query:  191 KKTKGRGFREEADSERHSRLADRNFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 562
            K+ KGRGF  E  +    R    +++++  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+  +NG +++ Q ++VDW F  GP
Sbjct:   33 KRRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQDMMGQPISVDWGFVRGP 154          
BLAST of CB293178 vs. ExPASy Swiss-Prot
Match: RBM8A_DROME (RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.283e-32
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  191 KKTKGRGFREEADSERHSRLADRNFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 562
            K  KGRGF  ++++       +R       +  PGPQRS+EGWI+ VT +HEEAQED++Q  F +YGEI+N+HLNLDRRTGF KGYAL+EYE  ++A  A  A+NG E++ QT+ VDW F  GP
Sbjct:   31 KHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154          
The following BLAST results are available for this feature:
BLAST of CB293178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RBM8A_RAT3.264e-3655.47RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm... [more]
RBM8A_HUMAN3.264e-3655.47RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE... [more]
RBM8A_BOVIN3.264e-3655.47RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2... [more]
RBM8A_XENTR7.270e-3656.25RNA-binding protein 8A OS=Xenopus tropicalis GN=rb... [more]
RBM8A_MOUSE9.495e-3654.69RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE... [more]
RB8AB_XENLA9.495e-3656.25RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8... [more]
RBM8A_DANRE2.115e-3556.00RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=... [more]
RB8AA_XENLA3.608e-3556.25RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8... [more]
RBM8A_SALSA1.371e-3453.60RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=... [more]
RBM8A_DROME1.283e-3252.42RNA-binding protein 8A OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05cg06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cg06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293178 ID=CB293178; Name=CB293178; organism=Citrus sinensis; type=EST; length=686bp
GCCCTTTGGAGATCTCAAATCCCTAAAAGTTCGAAAAAAACACCCTAAAA
TGGCGAACGCAGAAGTGGACGCGCTCGACTTCGAGGACGACGACTTGATG
GACGAGGACGGGACTGCCGACGTCGATGCATCCTCTTCCCCGCGGGCCCC
GCAGCCCAAGCTTAAGTCCGCCATCACTGGTGGCGCACCTAAGAAGACCA
AAGGACGCGGTTTTCGTGAAGAAGCCGACTCCGAGCGACATAGCCGGCTC
GCTGATCGTAATTTTGAGTCTCTTGGCACCGATGGGGGACCGGGTCCCCA
ACGATCTATTGAGGGATGGATAATTTTGGTTACTGGTGTGCATGAAGAGG
CACAAGAAGATGATTTACAAAATGTATTTGGTGAATATGGGGAGATCAGA
AACTTGCATTTGAATCTTGATCGTCGTACAGGTTTTGTGAAGGGGTATGC
GCTGATTGAATATGAGAATTTTGAGGAAGCACAGAATGCCATAACTGCAA
TGAATGGAGGTGAACTTCTTACACAGACCCTGACTGTTGATTGGGCCTTC
AGCAATGGGCCTAGTACTGGACCCTTCAAAAGAAAGAACATGAGGCCTGG
ACGGACACATCGCTCAAGGAGTCCCAGGAGAAGATACTGATGCCGAGCGA
GGACAAATGGTTATTTCAAATATGGGTTTTTTTTTT
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