CB293189

Overview
NameCB293189
Unique NameCB293189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10867 contig Csv1_Contig10867:1126..1969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293189 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.348e-18
Identity = 58/150 (38.67%), Postives = 81/150 (54.00%), Query Frame = -2
Query:  403 SVGGQAVQIPPSLFEMDEA-GDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVAL-FDTCYDF-SGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSSAMSIIGNVQQQGTRVSFDLANNRVGFTPNKC 843
            SVG   + I PS F ++   G GGII+D GT +T     AY S+R  F+    NL   +G +  FD C+   S   ++++PT  +HF  G  L+LP++NY I   S G  C A   +S  MSI GN+QQQ   V +D  N+ V F   +C
Sbjct:  288 SVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQI-NLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGD-LELPSENYFIS-PSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434          
BLAST of CB293189 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.681e-17
Identity = 57/152 (37.50%), Postives = 87/152 (57.24%), Query Frame = -2
Query:  403 SVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSF---VRLAGNLKPTSGVALFDTCYDF-SGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSS-AMSIIGNVQQQGTRVSFDLANNRVGFTPNKC 843
            +VGG  + IP S F++ + G GG+I+D GT +T L   AYN++  +F   + L    + +SG++   TC+   S   +V+VP +S+ F  G  L+L  +N LI   + G  C A   +S   +SI GN+QQQ T+V +DL N  V F P +C
Sbjct:  289 TVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLS---TCFQQPSDGSTVQVPEISMQFDGG-VLNLGEQNILIS-PAEGVICLAMGSSSQLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435          
The following BLAST results are available for this feature:
BLAST of CB293189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR4.348e-1838.67Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR3.681e-1737.50Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05ch02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ch02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293189 ID=CB293189; Name=CB293189; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTTTTTTTTCATCTCATTAAAACATACAGAAGTGCCCCATTACAAC
AGAGTAATAATAGTGCAAAATAACGCAAACACCCCAGACTACACTTGCCC
TTCAGCTTAGATATAATTTACTATACATGCCACTCAACCGTGCGAGGACA
CGGATCTAATTTATGATTTGATTAATGACACGACCCACTCCAGCCAAAAG
CTTAATGCAATTTATTGAGGTGGATCCCACTTTCATCCACCACCAGTCAA
CAACGCTACTTTAACGCAACATCTTTCAGTTCATTCTCCTAACAATTAAA
AGGGGTATAAAAGTTTCTCCTAACAAATAGACAGCTAACAGTCCCCTTTT
TCTACCAATTACCAGGGGTAACAAGGTAATTATGGGTTCCGAAAAATGCC
TAACACTTATTGGGAGTGAACCCGACGCGATTGTTCGCCAAATCAAAACT
GACACGTGTTCCCTGTTGCTGCACGTTGCCAATAATTGACATAGCCGACG
ACGTTGGAGCGAATGCGAAACAGAAAGTCCCAGCCGAGTCTACTGGAATC
AAGTAATTTTTGGCGGGTAAATCAAGAGCTTTTCCAGCACCGAAGTGAAG
CGACACCGTTGGGACCCTAACACTCCTTAATCCGGAGAAATCGTAGCACG
TGTCGAATAAAGCGACCCCGCTGGTGGGTTTCAAGTTACCCGCCAGCCTG
ACGAAAGAGTCGCGGAGCGAGTTGTAGGCCTGAGTCTGCAGGCGAGTTAT
GGCGGTTCCACAATCAACAATAATCCCGCCGTCGCCTGCTTCGTCCATTT
CAAAAAGCGATGGTGGGATTTGGACCGCCTGACCACCGACGCTG
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