CB293198

Overview
NameCB293198
Unique NameCB293198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:101..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.020e-52
Identity = 99/175 (56.57%), Postives = 115/175 (65.71%), Query Frame = 3
Query:  183 KTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVEKTPNAVNP 707
            K G +++AKF+LKPPPYPLN LEP MS+ TLEFHWGKHH+ YV+NL KQ+VGTEL DGKSLE++++ SYNKGD+LP FNNAAQ WNHDFFW                 LIERDFGS             TQFGSGWAWL Y+            P P E D  L+V K+PNAVNP
Sbjct:   18 KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTEL-DGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDE-DNKLVVLKSPNAVNP 190          
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.820e-46
Identity = 92/167 (55.09%), Postives = 104/167 (62.28%), Query Frame = 3
Query:  207 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVEKTPNAVNP 707
            KF+L+PPPYP++ALEPHMS  T EFHWGKHHRAYVDNLNKQI GTEL DGK+LED+++ +YNKG  LP FNNAAQAWNH FFW                 LI RDFGS             TQFGSGWAWL YK                 ++K L + KTPNA NP
Sbjct:    1 KFELQPPPYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTEL-DGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYK----------------PEEKKLALVKTPNAENP 150          
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 176.792 bits (447), Expect = 1.005e-43
Identity = 88/170 (51.76%), Postives = 105/170 (61.76%), Query Frame = 3
Query:  198 ISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVEKTPNAVNP 707
            ++A + LKPPP+ L+ALEPHMSK TLEFHWGKHHRAYVDNL KQ++GTEL +GK LE ++ ++YN GDLLP FNNAAQAWNH+FFW                 L+ERDF S             TQFG+GWAWL Y                   ++ L V KTPNAVNP
Sbjct:    7 VTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAY------------------SNEKLKVVKTPNAVNP 157          
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 70/167 (41.92%), Postives = 84/167 (50.30%), Query Frame = 3
Query:  210 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVEKTPNAVNP 707
            F  +P PY  NALE + M  +T E+H+GKHH+AYVDNLNK   GTEL D KSLE+V+  ++        FNNAAQ WNH FFW                  I +DFGS             TQFGSGWAWL+                  +   +L V KTPNA NP
Sbjct:    3 FVQEPLPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELAD-KSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPAGGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWLI------------------DDGGTLKVTKTPNAENP 150          
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 66/167 (39.52%), Postives = 82/167 (49.10%), Query Frame = 3
Query:  210 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVEKTPNAVNP 707
            F   P P+P +ALEP+ M  +T ++H+GKHH AYV NLNK + GT + +  SLEDV+  S+     +  FNNAAQ WNH FFW                  I+  FGS             TQFGSGWAWLV                  +   +L V KTPNA NP
Sbjct:    3 FTQPPLPFPKDALEPYGMKAETFDYHYGKHHAAYVTNLNKLVEGTPM-ESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKAGGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWLV------------------DDGGTLKVTKTPNAENP 150          
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 66/160 (41.25%), Postives = 76/160 (47.50%), Query Frame = 3
Query:  228 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVEKTPNAVNP 707
            PY   ALEP +SK TLEFH  KHH AYV+N N  + GT+L D +S+EDV+ A          FNNAAQAWNH F+W                  I  DFGS             TQFGSGWAWLV                    + +L V KT NA NP
Sbjct:    9 PYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDL-DNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKPGGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLVL------------------DNGTLKVTKTGNAENP 149          
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 58/131 (44.27%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 602
            F L   PY L+AL PH+SK+TLE+H+GKHH  YV NLNK I GTE  +  +LE++++ +  KG +   FNNAAQ WNH F+W                  I + FGS             T FGSGWAWLV
Sbjct:    3 FTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLIPGTEF-ESMTLEEIIMKA--KGGI---FNNAAQVWNHTFYWHSMSPNGGGEPKGRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLV 127          
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 60/133 (45.11%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 608
            F+L P PY  NALEPH+S +TLE+H  KHH  YV NLN  I GTE  +GKSLE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K
Sbjct:    3 FELPPLPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGTEF-EGKSLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK 129          
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 58/131 (44.27%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 602
            F+L   PY LNALEPH+S++TLE+H GKHHRAYV+ LNK I GT   + + LE+++  S   G +   FNNAAQ WNH F+W                  I++ FGS               FGSGWAWLV
Sbjct:    3 FELPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGTPF-EKEPLEEIIRKS--DGGI---FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLV 127          
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 58/133 (43.61%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 608
            F+L P PY  +AL+PH+SK+TLEFH  KHH  YV NLN  + GTE  +GK+LE++V  S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K
Sbjct:    3 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKTS--SGGI---FNNAAQVWNHTFYWNCLAPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK 129          
The following BLAST results are available for this feature:
BLAST of CB293198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
SODF_SOYBN2.020e-5256.57Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL4.820e-4655.09Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH1.005e-4351.76Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_ANASP5.011e-2741.92Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_PLEBO6.125e-2539.52Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SYNY32.328e-2441.25Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_LEGPH6.773e-2444.27Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_PSEAE7.488e-2345.11Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_COXBU7.488e-2344.27Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]
SODF_PSEPU2.845e-2243.61Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ch07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ch07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293198 ID=CB293198; Name=CB293198; organism=Citrus sinensis; type=EST; length=709bp
ACACACAGAGTTGATCAGGCTTTGCTCCCCTCTGCTATAACCAAAGCTGT
AATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAAC
AATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTT
TTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATT
TCTGCGAAATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGA
GCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACA
GAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGT
GATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGA
CTTGCTTCCACCTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCT
TCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTT
CTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGA
ATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTG
TATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTT
CCATCGGAGAAGGACAAGAGCCTTTTAGTGGAGAAGACTCCCAATGCTGT
CAATCCTCT
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