CB293203

Overview
NameCB293203
Unique NameCB293203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293203 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.522e-56
Identity = 114/230 (49.57%), Postives = 139/230 (60.43%), Query Frame = 2
Query:   56 LNTTEPIRRTALNRVFAVVYTCAIFALLYHRVETLTIRSINPXXXXXXXXXXXXXXILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVFICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTXXXXXXXXXXXXHWLPFCRKFNLMERNPRAYFXXXXXXXXHACCSEIKMMYESMKVKVEHVVESGKVGDENITGDRGREAFSKWTDDFT 745
            L+T  P RRT   R++AV +TC I AL+YH V +L    +                +LA MWATT + R +P+ R E+P        P +FP LDVFICTADPYKEPP+ VVNTALSVMAY+YP++K+SVYVSDDGGS+LT            HWLPFC+K N+ +R+P  YF              IKMMYE MK +VEHVVESGKV    IT D+ R  F  WTD FT
Sbjct:   33 LHTCHPCRRTIPYRIYAVFHTCGIIALMYHHVHSL----LTANTTLITSLLLLSDIVLAFMWATTTSLRYKPVRRTEYPEKY--AAEPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKKNNVQDRSPEVYFSSKLRSRSDE-AENIKMMYEDMKSRVEHVVESGKVETAFITCDQFRGVFDLWTDKFT 255          
BLAST of CB293203 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.339e-56
Identity = 114/233 (48.93%), Postives = 141/233 (60.52%), Query Frame = 2
Query:   56 LNTTEPIRRTALNRVFAVVYTCAIFALLYHRVETLTIRSINPXXXXXXXXXXXXXXILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVFICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTXXXXXXXXXXXXHWLPFCRKFNLMERNPRAYFXXXXXXXXHACCSE---IKMMYESMKVKVEHVVESGKVGDENITGDRGREAFSKWTDDFT 745
            L+T  P RRT   R++AV +TC I AL+YH V ++    +N               +LA MWATT + R+ PIHR E+P       +P +FP LDVFICTADPYKEPP+ VVNTALSVMAY+YP+ K+SVYVSDDGGS+LT            HWLPFC+  N+ +R+P  YF        H+   E   +KMMYE MK +VEHVVESGKV    I  D+    F  WTD FT
Sbjct:   11 LHTCHPCRRTIPYRIYAVFHTCGIIALMYHHVHSI----VNANNTLITCLLLLSDIVLAFMWATTTSLRLNPIHRTEYPEKY--AAKPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSHKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKNNNVQDRSPEVYF----SSKSHSSSDEAENLKMMYEDMKSRVEHVVESGKVETAFIACDQFSCVFDLWTDKFT 233          
BLAST of CB293203 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.135e-55
Identity = 111/230 (48.26%), Postives = 139/230 (60.43%), Query Frame = 2
Query:   56 LNTTEPIRRTALNRVFAVVYTCAIFALLYHRVETLTIRSINPXXXXXXXXXXXXXXILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVFICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTXXXXXXXXXXXXHWLPFCRKFNLMERNPRAYFXXXXXXXXHACCSEIKMMYESMKVKVEHVVESGKVGDENITGDRGREAFSKWTDDFT 745
            L+T  P RRT   R++A+ +TC I AL+YH V +L    +                +LA MWATT + R+ P+HR E P       +P +FP LDVFICTADPYKEPP+ VVNTALSVMAY+YP++K+SVYVSDDGGS+LT             WLPFC+K N+ +R+P  YF              +KMMYE MK +VEHVVESGKV    IT D+ R  F  WTD F+
Sbjct:   14 LHTCHPCRRTIPYRIYAIFHTCGIIALMYHHVHSL----VTANNTLITCLLLLSDIVLAFMWATTTSLRLNPVHRTECPEKY--AAKPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTFFALIEAAKFSKQWLPFCKKNNVQDRSPEVYFSSESHSRSDE-AENLKMMYEDMKSRVEHVVESGKVETAFITCDQFRGVFDLWTDKFS 236          
BLAST of CB293203 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.000e-33
Identity = 84/235 (35.74%), Postives = 118/235 (50.21%), Query Frame = 2
Query:   56 LNTTEPIRRTALNRVFAVVYTCAIFALLYHRVETLTIRSINPXXXXXXXXXXXXXXILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVFICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTXXXXXXXXXXXXHWLPFCRKFNLMERNPRAYFXXXXXXXXHACCSE-----IKMMYESMKVKVEHVVESGKVGDENITGDRGREAFSKWTDDFT 745
            L  TE +   A+ R+ A      I  +LY+R   +                       A+ W  TQ+ R  P+ RR F   L +  +    P +DVF+CTADP+ EPP  V++T LSVMAY+YP+EK+SVY+SDDGGS LT             WLPFCR++N+  R+P AYF        H  CS      IK +YE M+ +++  V SGK+ +E     +G   F +W  + T
Sbjct:   11 LFATEKVGGRAVYRLQAATVAAGILLVLYYRATRVPAAGEGRAAWLGMAAAELW---FAVYWVITQSVRWCPVRRRTFKNRLAERYK-ENLPGVDVFVCTADPHAEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASMFAKKWLPFCRRYNIEPRSPAAYF--SESEGHHNLCSPKEWSFIKNLYEEMRERIDSAVMSGKIPEEIKLKHKG---FDEWNSEMT 236          
BLAST of CB293203 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.919e-33
Identity = 84/235 (35.74%), Postives = 117/235 (49.79%), Query Frame = 2
Query:   56 LNTTEPIRRTALNRVFAVVYTCAIFALLYHRVETLTIRSINPXXXXXXXXXXXXXXILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVFICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTXXXXXXXXXXXXHWLPFCRKFNLMERNPRAYFXXXXXXXXHACC-----SEIKMMYESMKVKVEHVVESGKVGDENITGDRGREAFSKWTDDFT 745
            L TTE +   A+ RV A      I  +LY+R   +                       A+ W   Q+ R RP  RR F   L +    +  P +D+F+CTADP  EPP  V++T LSVMAY+YP+EK+SVY+SDDGGS LT             WLPFC+++N+  R+P AYF        H  C     + IK +YE M+ +++    SGK+ +E     +G   F +W  DFT
Sbjct:   16 LFTTEELGGRAVYRVQAATVAAGILLVLYYRATRVPAAGEGRAAWLGMAAAELW---FAVYWVIAQSVRWRPFRRRTFRDRLAERYE-QNLPGVDIFVCTADPQSEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASIFAKKWLPFCKRYNIEPRSPAAYF--SESKVHHNLCIPKEWALIKNLYEEMRERIDTATMSGKIPEEMKLKHKG---FDEWNSDFT 241          
BLAST of CB293203 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.067e-30
Identity = 68/172 (39.53%), Postives = 97/172 (56.40%), Query Frame = 2
Query:  239 WATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVFICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTXXXXXXXXXXXXHWLPFCRKFNLMERNPRAYFXXXXXXXXHACCSE---IKMMYESMKVKVEHVVESGKVGDENITGDRGREAFSKWTDDFT 745
            W  T + R  P++RR F   L +     E P++D+F+CTADP  EPP+ V++T LSVMAYDY  EKL++Y+SDD GS LT            HW+PFC+K+ +  R+P AYF             E   +K +Y+ M  +V  VV SG++ +      RG   FS+W ++FT
Sbjct:   82 WVLTLSVRWCPVYRRTFKDRLAQSYSEDELPSVDIFVCTADPTAEPPMLVISTVLSVMAYDYLPEKLNIYLSDDAGSVLTFYVLCEASEFAKHWIPFCKKYKVEPRSPAAYFAKVASPPDGCGPKEWFTMKELYKDMTDRVNSVVNSGRIPEVPRCHSRG---FSQWNENFT 250          
BLAST of CB293203 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.957e-28
Identity = 69/171 (40.35%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  233 LMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVFICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTXXXXXXXXXXXXHWLPFCRKFNLMERNPRAYFXXXXXXXXHACCSEIKMMYESMKVKVEHVVESGKVGDENITGDRGREAFSKWTDDFT 745
            L W  TQ+ R  P+ R  F   L +     + P LDVF+CTADP  EPPL VVNT LSV A DYP EKL+VY+SDDGGS LT             W+PFC+KFN+   +P AY          A   E+  +Y  M  ++E     G++ +E     +  + FS+W  D T
Sbjct:   78 LYWVVTQSSRWNPVWRFPFSDRLSRRYGS-DLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDYPPEKLAVYLSDDGGSELTFYALTEAAEFAKTWVPFCKKFNVEPTSPAAYLSSKANCLDSA-AEEVAKLYREMAARIETAARLGRIPEE--ARVKYGDGFSQWDADAT 244          
BLAST of CB293203 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22
Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 2
Query:  230 ALMWATTQAFRMRPIHRREFPG---------NLQKVVRPREFPALDVFICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTXXXXXXXXXXXXHWLPFCRKFNLMERNPRAYFXXXXXXXXHACCSE-------IKMMYESMKVKVEHVVES 670
            AL W   Q  ++ P++R    G         NL+      + P +DVF+ TADP KEPPL   NT LS++A DYP EKL+ Y+SDDGG+ LT             W+PFCRK N+  RNP AYF        +    +       +K  Y+  KV++  + E+
Sbjct:  358 ALSWLLDQLPKLCPVNRLTDLGVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAQTASFASTWVPFCRKHNIEPRNPEAYFGQKRNFLKNKVRLDFVRERRRVKREYDEFKVRINSLPEA 520          
BLAST of CB293203 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 64/172 (37.21%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  230 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVFICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTXXXXXXXXXXXXHWLPFCRKFNLMERNPRAYFXXXXXXXXH----ACCSEIKMM---YESMKVKVEHVVE-SGKVGDENITGDRG 709
            A+ W   Q  +  PI R  +   L    +K  +P E   +DVF+ T DP KEPPL   NT LS++A DYP EK++ YVSDDG + LT             W+PFC+KF++  R P  YF        H    A   E + M   YE  KVK+  +V  S KV ++  T   G
Sbjct:  322 AVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSYTAEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKHKVDPAFVMERRAMKRDYEEFKVKINALVSVSQKVPEDGWTMQDG 493          
BLAST of CB293203 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-21
Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  323 EFPALDVFICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTXXXXXXXXXXXXHWLPFCRKFNLMERNPRAYFXXXXXXXXHACCSE-------IKMMYESMKVKVEHVVES 670
            + P LD+F+ TADP KEPPL   NT LS++A DYP EKLS YVSDDGG+ LT             W+PFCRK ++  RNP +YF        +   S+       +K  Y+  KV++  + +S
Sbjct:  396 DLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFVKDRRRVKREYDEFKVRINSLPDS 518          
The following BLAST results are available for this feature:
BLAST of CB293203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLG3_ARATH2.522e-5649.57Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLG2_ARATH7.339e-5648.93Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLG1_ARATH2.135e-5548.26Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLE6_ORYSJ3.000e-3335.74Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE1_ORYSJ3.919e-3335.74Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE2_ORYSJ1.067e-3039.53Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLE1_ARATH4.957e-2840.35Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLD5_ARATH3.112e-2236.20Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CESA9_ARATH1.183e-2137.21Probable cellulose synthase A catalytic subunit 9 ... [more]
CSLD2_ORYSJ2.017e-2141.46Cellulose synthase-like protein D2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ch10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ch10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293203 ID=CB293203; Name=CB293203; organism=Citrus sinensis; type=EST; length=746bp
GCACGTTGCAAAAAAGAAATGAGAGGCAAAAGTAGCGGCACCGCCTATCC
CTCCTCTTAACACGACGGAGCCCATCCGCCGGACCGCCTTGAACCGTGTG
TTCGCGGTAGTTTACACGTGTGCCATATTTGCTCTACTGTATCACCGTGT
AGAAACACTAACTATCCGCAGCATAAACCCCTTGGTGCTAGTAGTATCTT
TCTGTTTGTTACTTTCCGATGTTATTCTAGCCTTGATGTGGGCAACCACG
CAGGCCTTTCGCATGCGCCCTATTCATCGCAGGGAATTCCCCGGAAACCT
CCAAAAAGTTGTGAGACCGAGAGAATTTCCTGCTTTGGATGTGTTTATAT
GCACAGCGGATCCCTACAAGGAACCGCCCCTCAGTGTTGTGAACACGGCT
TTATCGGTGATGGCTTACGACTATCCAACGGAGAAGCTTTCGGTTTATGT
ATCGGACGATGGTGGATCGGCACTTACTTTCTTCGCTTTCATGGAGGCAG
CTAAGTTTGCAGCCCACTGGTTACCTTTTTGCAGGAAATTCAATCTTATG
GAGAGAAATCCTCGTGCATATTTCTCCTCATCATCATCCACATCAACCCA
TGCTTGTTGCTCCGAGATTAAGATGATGTATGAAAGTATGAAAGTCAAGG
TAGAGCATGTGGTTGAGAGTGGGAAAGTTGGCGACGAGAACATCACTGGA
GACCGAGGACGGGAAGCATTCAGTAAATGGACTGATGATTTTACAC
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