CB293206

Overview
NameCB293206
Unique NameCB293206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10380 contig Csv1_Contig10380:64..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB293206 vs. ExPASy Swiss-Prot
Match: YCF19_GUITH (Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.393e-13
Identity = 33/86 (38.37%), Postives = 56/86 (65.12%), Query Frame = -1 
Query:  187 LNTPLTVVAAGLAKWLDIYSGVLLVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLAQILT 444
            ++   T++ +    +L IY  +LL+RV L+WFPN+ W  QP  ++  + DPYL +FR I+PP+   +D+SP+L F +L  + QI++
Sbjct:    1 MSNSFTLLFSSFIGFLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIVPPLIG-IDISPILGFILLQCIMQIVS 85
The following BLAST results are available for this feature:
BLAST of CB293206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YCF19_GUITH8.393e-1338.37Uncharacterized protein ycf19 OS=Guillardia theta ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05ch12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ch12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293206 ID=CB293206; Name=CB293206; organism=Citrus sinensis; type=EST; length=786bp
TTTTTTTTTTTTTTTTTCAAAACACTACGAGCAACTCAAATGTCAATTTC
AAACATGGCACTAAGTATCAAAATGTGACAATACCCCTTTAGAAACTGGC
ACGTACATCCAACAATCAAAACTGTATCAATATTTGAGAACCCAATATTC
ACTATTAATGACACTTACTCACGCTCCCCGACTGAAAGTAAGTATCTGGG
CGAGTGTTCCCAAAACGGCGAAAGCTAACAAGGGGCTGACATCCAGTGTA
TCGAAAACAGGGGGGATAATATTCCGAAAGAGATTCAAATAAGGATCACA
CAAGTCCCGAATGGCCGAAAGCGGCTGCCTTTCCCAAGGAATGTTGGGGA
ACCAACTCAGCAAAACCCTAACCAACAAAACCCCACTGTAAATGTCAAGC
CACTTGGCCAATCCCGCCGCCACAACCGTGAGCGGCGTGTTCAAGCTCCC
GCTAGGGCGCTCACGGAGAGCCGCGAAGAACAAGGGCCCCACAGACTGAA
CCAAATTGGTTGTTGGTTGTGGGAGGGTTGGGATTTTGGAGATGGCGAAT
TTGAGGAGAAATCCGGAGAGAGATAGGAGGGTGGTGACGGTGCGAGTTGA
GTCGTTGAGCAGAGGGGAGAGAGGTGTGATTTTGGGGGTCTTGAGGGGTA
AAGTTGGGAGAGATGAGGATGACGATGTGGCTGCGGCTTTGATGGGCAGG
AAAGAGGGGGAGGCACGGCAGGGAGATTGGTGGAGGGTTTTAGGGTTTGA
GAGAAACGGCGGCGAACGGAGGGATAGTACAGCGGC
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