CB293213

Overview
NameCB293213
Unique NameCB293213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293213 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.835e-26
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:  560 GMKYKLAASANKDEEDLEGRTTLHFACGYGEVECAQLLLEAGANVDAVDKNK 715
            G+K  LA+  NKDEED EGRT LHFACGYGE++CAQ+L++AGA+V+AVDKNK
Sbjct:  233 GLKAALASGGNKDEEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKNK 284

HSP 2 Score: 55.4546 bits (132), Expect = 5.835e-26
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 3 
Query:  714 STTVHYVANYD*KECVAPLLKNGAAVTL*NMDRKTPIGCAKL 839
            +T +HY A Y  KECV+ LL+NGAAVTL N+D KTPI  AKL
Sbjct:  285 NTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKL 326
The following BLAST results are available for this feature:
BLAST of CB293213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AKR2_ARATH5.835e-2671.15Ankyrin repeat domain-containing protein 2 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_05da03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05da03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293213 ID=CB293213; Name=CB293213; organism=Citrus sinensis; type=EST; length=841bp
GCCCGTGGGTTTCTCTCATCTTGATTTTTTCACTCATCATCTCAGATCAA
ATCCACCGTCTCTCTCACACTAATCAACCAATCGGATCCATCTACCCAGG
TATTTAGTTTGTACATGAGAGCTAGAGAGAGGCAGAGCCAATATCGTGTC
CGCTGCTTCTTTTCTAACCATCCACCGTTACCTTCGTTGCACTGTTGTCT
ACACCATTAGTTCTTTAGCCTTTACTGTCGTCGTCCTGGCGTTCGCCGGA
ATCATTGCCCCGTGAGCTGCCCCAAGCTGCCATCGAAAACCCTCAAAACA
AGTGTTATTTGCTTGTTTTGAGCTCTACACTCTTTGCTAGGAACACTAAA
GATGGGCGCTCAATAATTTGAGCAATCTTTAAAAATCTATGCAGTGGCGT
ATCCTGGAATGAAACCAAAAAAAGAGTTGAGGTTTATGTTTGGAGTCATT
CTAGGACATGAAGAGCAGCACGGATGACTTGCAGGAAGAGCAGTGTGGCT
CGAGCTTGGTGTGGAAAAAGAACATGTTCTGCTTATTCAATCAACCAAAA
CAAAAATTTGGTATGAAATATAAACTAGCAGCCAGTGCTAATAAGGATGA
GGAAGATTTAGAAGGAAGGACAACGTTGCATTTTGCCTGCGGATATGGTG
AGGTGGAGTGTGCTCAACTCCTACTTGAGGCTGGAGCAAATGTGGATGCT
GTGGATAAGAACAAGTACTACCGTACATTATGTAGCTAATTATGACTAGA
AGGAATGTGTAGCCCCTCTGTTGAAGAACGGTGCTGCTGTAACTCTGTAG
AACATGGATCGCAAAACTCCCATTGGATGTGCCAAGCTCAA
back to top