CB293216

Overview
NameCB293216
Unique NameCB293216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2689 contig Csv1_Contig2689:117..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.979e-91
Identity = 166/188 (88.30%), Postives = 178/188 (94.68%), Query Frame = -3
Query:  216 NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKLPS 779
            NIDPKYNDQQLRATVSLPKGTG++V VAVLAQGEK DEAK+AGAD+VG DDLIEQIKGGFMEFDKLIASPDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVHIPFGK +F E+DLLINFLAAVKS+E NKPKGAKGVYWKSA+ICSSMGPSI LNI+EM+DFK P+
Sbjct:  157 NIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344          
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.374e-84
Identity = 152/189 (80.42%), Postives = 171/189 (90.48%), Query Frame = -3
Query:  213 NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKLPSN 779
            NIDPKYNDQQLRATVSLPKGTGK+VK+AVLAQG+K DEAK AGAD+VGG++LIEQIKGGFM+FDKLIA+ DMM KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F E+DLLIN  A +KS+E NKP GAKGVYWKSA+I SSMGPSI LNI+EMLD+K PSN
Sbjct:  163 NIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351          
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.023e-63
Identity = 119/182 (65.38%), Postives = 145/182 (79.67%), Query Frame = -3
Query:  231 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLD 776
            ID KY DQQLR T+ LPKGTGK V++AV+AQGEK +EA  AGADL G +DLI+ I  G ++FD+LIA+PDMM  +A LGK+LGPRGLMP+PK+GTVT +I +AI+EFKKGK+EYRADK+GIVHI FGK DF  +DLL N  A  +SI+ N+P G KG YWKS YICS+MGPSI L+I E  D
Sbjct:   49 IDTKYADQQLRTTLVLPKGTGKKVRIAVVAQGEKINEALAAGADLAGAEDLIQNIMKGDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKSGTVTADIKEAIDEFKKGKLEYRADKSGIVHILFGKTDFSVEDLLANLEAVQESIDKNRPSGVKGRYWKSFYICSTMGPSIQLDISEFRD 230          
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.977e-63
Identity = 114/185 (61.62%), Postives = 147/185 (79.46%), Query Frame = -3
Query:  222 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKL 776
            IDPKY DQQLR TVSLPKGTG++V+VAV+ +GEK  EA NAGAD+VG ++LIE+I  G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK GTVTT++  AI EFK GK+E+RAD+TGIVH+ FGK  F  +DLL+N  A  ++++ N+P GAKG YW++ Y+ SSMGPSI ++I  + D KL
Sbjct:   50 IDPKYTDQQLRTTVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234          
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.977e-63
Identity = 115/182 (63.19%), Postives = 145/182 (79.67%), Query Frame = -3
Query:  231 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLD 776
            +D KY DQQLR T+ LPKGTGK +++AV+A+GEK  EA NAGADL G  DL++ I  G ++FD+LIA+PDMM  +A LGK+LGPRGLMP+PK+GTVT+++  AIEEFKKGK+EYRADK+GIVHI FGK +F  +DLL+N  A  +SI+ N+P G KG YWKS YICS+MGPSI L+I E  D
Sbjct:   49 LDTKYADQQLRTTLVLPKGTGKKIRIAVIAEGEKATEAINAGADLAGSTDLVQDIMKGMLDFDRLIATPDMMPLIAKLGKVLGPRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGIVHISFGKTNFSVNDLLLNLEAVQESIDKNRPAGVKGKYWKSFYICSTMGPSIQLDISEFRD 230          
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.889e-63
Identity = 113/185 (61.08%), Postives = 152/185 (82.16%), Query Frame = -3
Query:  222 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKL 776
            IDPKY DQQLR TV+LPKGTG++++VAV+A+GEK  EA  AGAD+VG ++LI++I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP+PKAGTVT ++PQAI+EFK GKVE+RAD++GIVH+ FGK  F  +DLL+N  A  +SI+ N+P GAKG YW+S Y+ ++MGPSI ++I  + + KL
Sbjct:   49 IDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVTEASAAGADVVGSEELIDEIQKGRMDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSAEDLLVNLKALQESIDRNRPSGAKGRYWRSVYVAATMGPSIQVDINALRELKL 233          
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.131e-62
Identity = 113/185 (61.08%), Postives = 146/185 (78.92%), Query Frame = -3
Query:  222 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKL 776
            IDPKY DQQLR TVSLPKGTG+ V+VAV+A+GEK  EA NAGAD+VG ++LIE+I  G M+F+ LIA+PDMM KVA LG++LGPRGLMP+PK GTVT ++  AI EFK GK+E+RAD+TGIVH+ FGK  F  +DLL N  A  ++++ N+P GAKG YW+S ++ +SMGPSI ++I  + D KL
Sbjct:   51 IDPKYTDQQLRTTVSLPKGTGQEVRVAVIARGEKVQEANNAGADIVGSEELIEEIFKGMMDFEVLIATPDMMPKVAKLGRLLGPRGLMPSPKGGTVTADLTNAITEFKAGKLEFRADRTGIVHVMFGKASFTPEDLLANLKALQETVDRNRPSGAKGRYWRSVFVSASMGPSIAVDINALRDLKL 235          
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.521e-62
Identity = 111/182 (60.99%), Postives = 144/182 (79.12%), Query Frame = -3
Query:  231 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLD 776
            IDPKY DQQLR TV+LPKGTG+S+++AV+ +GEK  EAK AGA+LVG ++L++ I GG M+FD LIA+PDMM KVA LG++LGPRGLMPNPK GTVTT++  AI EFK GK+E+RAD++GIVH+ FGK  F  DDLL N  +  ++++ NKP GAKG YWKS YI S+MGPS+ ++   + D
Sbjct:   49 IDPKYTDQQLRTTVALPKGTGRSIRIAVITRGEKVAEAKAAGAELVGDEELVDSIAGGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTTDVTNAINEFKAGKLEFRADRSGIVHVQFGKASFSADDLLENLKSVQETVDRNKPSGAKGRYWKSLYITSTMGPSVEVDFSALQD 230          
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.521e-62
Identity = 112/185 (60.54%), Postives = 150/185 (81.08%), Query Frame = -3
Query:  222 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKL 776
            IDPKY DQQLR TV+LPKGTG+ V+VAV+A+GEK  EA NAGAD+VG ++LI++I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP+PK GTVT ++  AI EFK GK+E+RAD+TGIVH+ FGK  F  +DLL+N  A  ++I+ N+P GAKG YW++ Y+ ++MGPSI ++I  + D+KL
Sbjct:   50 IDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234          
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.615e-62
Identity = 112/188 (59.57%), Postives = 147/188 (78.19%), Query Frame = -3
Query:  213 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKLPSN 776
            IDPKY+DQQ+R TVSLPKGTG++V+VAVLA+GEK  EA +AGAD+ G ++LIE+I+ G M+FD LIA+PDMM K+A LGK LGPRGLMP+PK GTVT ++  A+ EFK GK+E+RAD+TGIVH+ FGK  F  DDLL N  A  ++I+ N+P GAKG +W++ ++ SSMGPSI ++I  + D K   N
Sbjct:   51 IDPKYSDQQIRTTVSLPKGTGQTVRVAVLARGEKVKEATDAGADIAGSEELIEEIQKGMMDFDVLIATPDMMPKIARLGKQLGPRGLMPSPKGGTVTADLAAAVNEFKAGKLEFRADRTGIVHVMFGKASFSADDLLANLKALQETIDRNRPSGAKGRFWRTVFVSSSMGPSIPVDINALRDLKFEDN 238          
The following BLAST results are available for this feature:
BLAST of CB293216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_ARATH1.979e-9188.3050S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RK1_SPIOL1.374e-8480.4250S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RK1_RHDSA1.023e-6365.3850S ribosomal protein L1, chloroplastic OS=Rhodomo... [more]
RL1_MICAN2.977e-6361.6250S ribosomal protein L1 OS=Microcystis aeruginosa... [more]
RK1_GUITH2.977e-6363.1950S ribosomal protein L1, chloroplastic OS=Guillar... [more]
RL1_THEEB3.889e-6361.0850S ribosomal protein L1 OS=Thermosynechococcus el... [more]
RL1_CYAP81.131e-6261.0850S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RL1_SYNR32.521e-6260.9950S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_ANASP2.521e-6260.5450S ribosomal protein L1 OS=Anabaena sp. (strain P... [more]
RL1_SYNY35.615e-6259.5750S ribosomal protein L1 OS=Synechocystis sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05da05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05da05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293216 ID=CB293216; Name=CB293216; organism=Citrus sinensis; type=EST; length=781bp
TTTAGAACGGAACCCAGCATGCTGTATGCATTTTTCCTTTTTTTTTATTT
GCTACAATCTCATCCACATTGATAATCAAGATCTCCTCACCTCACGATAA
TTCGCTCTCCTACAACTTTTGCCAAGCAGGGGCAAGCCCTGGCATGGGTA
TCAAAGAGGCTGACTGAACAGTTAAAGATATCATTTACAAAATTTAGTTA
TGTCGTTTAGAAATTTGATGGAAGCTTGAAATCGAGCATTTCTTTTATGT
TTAATCCAATGGAAGGTCCCATTGATGAACAAATGTAAGCACTTTTCCAG
TACACTCCTTTGGCCCCTTTTGGCTTGTTGGCTTCAATTGATTTAACAGC
AGCAAGGAAGTTTATGAGGAGGTCATCTTCAAAAAAATCACCTTTCCCAA
AAGGGATGTGGACAATCCCAGTTTTATCTGCTCTATATTCAACTTTTCCC
TTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGTTGTAACAGTACCAGC
TTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAATTTTTCCTAGGCTGG
CAACCTTAACCATCATATCTGGTGAAGCAATTAGCTTGTCGAACTCCATG
AATCCTCCTTTTATTTGTTCAATCAAGTCATCACCACCAACCAAATCTGC
TCCTGCATTTTTTGCTTCATCGAACTTTTCACCTTGAGCAAGAACAGCCA
CCTTAACAGATTTTCCAGTTCCCTTGGGTAAACTCACTGTTGCTCTAAGC
TGTTGATCATTGTATTTGGGATCAATGTTGA
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