CB293216
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1) HSP 1 Score: 335.495 bits (859), Expect = 1.979e-91 Identity = 166/188 (88.30%), Postives = 178/188 (94.68%), Query Frame = -3 Query: 216 NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKLPS 779 NIDPKYNDQQLRATVSLPKGTG++V VAVLAQGEK DEAK+AGAD+VG DDLIEQIKGGFMEFDKLIASPDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVHIPFGK +F E+DLLINFLAAVKS+E NKPKGAKGVYWKSA+ICSSMGPSI LNI+EM+DFK P+ Sbjct: 157 NIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 1.374e-84 Identity = 152/189 (80.42%), Postives = 171/189 (90.48%), Query Frame = -3 Query: 213 NIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKLPSN 779 NIDPKYNDQQLRATVSLPKGTGK+VK+AVLAQG+K DEAK AGAD+VGG++LIEQIKGGFM+FDKLIA+ DMM KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F E+DLLIN A +KS+E NKP GAKGVYWKSA+I SSMGPSI LNI+EMLD+K PSN Sbjct: 163 NIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 1.023e-63 Identity = 119/182 (65.38%), Postives = 145/182 (79.67%), Query Frame = -3 Query: 231 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLD 776 ID KY DQQLR T+ LPKGTGK V++AV+AQGEK +EA AGADL G +DLI+ I G ++FD+LIA+PDMM +A LGK+LGPRGLMP+PK+GTVT +I +AI+EFKKGK+EYRADK+GIVHI FGK DF +DLL N A +SI+ N+P G KG YWKS YICS+MGPSI L+I E D Sbjct: 49 IDTKYADQQLRTTLVLPKGTGKKVRIAVVAQGEKINEALAAGADLAGAEDLIQNIMKGDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKSGTVTADIKEAIDEFKKGKLEYRADKSGIVHILFGKTDFSVEDLLANLEAVQESIDKNRPSGVKGRYWKSFYICSTMGPSIQLDISEFRD 230
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 2.977e-63 Identity = 114/185 (61.62%), Postives = 147/185 (79.46%), Query Frame = -3 Query: 222 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKL 776 IDPKY DQQLR TVSLPKGTG++V+VAV+ +GEK EA NAGAD+VG ++LIE+I G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK GTVTT++ AI EFK GK+E+RAD+TGIVH+ FGK F +DLL+N A ++++ N+P GAKG YW++ Y+ SSMGPSI ++I + D KL Sbjct: 50 IDPKYTDQQLRTTVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAEDLLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKL 234
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 2.977e-63 Identity = 115/182 (63.19%), Postives = 145/182 (79.67%), Query Frame = -3 Query: 231 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLD 776 +D KY DQQLR T+ LPKGTGK +++AV+A+GEK EA NAGADL G DL++ I G ++FD+LIA+PDMM +A LGK+LGPRGLMP+PK+GTVT+++ AIEEFKKGK+EYRADK+GIVHI FGK +F +DLL+N A +SI+ N+P G KG YWKS YICS+MGPSI L+I E D Sbjct: 49 LDTKYADQQLRTTLVLPKGTGKKIRIAVIAEGEKATEAINAGADLAGSTDLVQDIMKGMLDFDRLIATPDMMPLIAKLGKVLGPRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGIVHISFGKTNFSVNDLLLNLEAVQESIDKNRPAGVKGKYWKSFYICSTMGPSIQLDISEFRD 230
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 3.889e-63 Identity = 113/185 (61.08%), Postives = 152/185 (82.16%), Query Frame = -3 Query: 222 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKL 776 IDPKY DQQLR TV+LPKGTG++++VAV+A+GEK EA AGAD+VG ++LI++I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP+PKAGTVT ++PQAI+EFK GKVE+RAD++GIVH+ FGK F +DLL+N A +SI+ N+P GAKG YW+S Y+ ++MGPSI ++I + + KL Sbjct: 49 IDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVTEASAAGADVVGSEELIDEIQKGRMDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSAEDLLVNLKALQESIDRNRPSGAKGRYWRSVYVAATMGPSIQVDINALRELKL 233
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.131e-62 Identity = 113/185 (61.08%), Postives = 146/185 (78.92%), Query Frame = -3 Query: 222 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKL 776 IDPKY DQQLR TVSLPKGTG+ V+VAV+A+GEK EA NAGAD+VG ++LIE+I G M+F+ LIA+PDMM KVA LG++LGPRGLMP+PK GTVT ++ AI EFK GK+E+RAD+TGIVH+ FGK F +DLL N A ++++ N+P GAKG YW+S ++ +SMGPSI ++I + D KL Sbjct: 51 IDPKYTDQQLRTTVSLPKGTGQEVRVAVIARGEKVQEANNAGADIVGSEELIEEIFKGMMDFEVLIATPDMMPKVAKLGRLLGPRGLMPSPKGGTVTADLTNAITEFKAGKLEFRADRTGIVHVMFGKASFTPEDLLANLKALQETVDRNRPSGAKGRYWRSVFVSASMGPSIAVDINALRDLKL 235
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.521e-62 Identity = 111/182 (60.99%), Postives = 144/182 (79.12%), Query Frame = -3 Query: 231 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLD 776 IDPKY DQQLR TV+LPKGTG+S+++AV+ +GEK EAK AGA+LVG ++L++ I GG M+FD LIA+PDMM KVA LG++LGPRGLMPNPK GTVTT++ AI EFK GK+E+RAD++GIVH+ FGK F DDLL N + ++++ NKP GAKG YWKS YI S+MGPS+ ++ + D Sbjct: 49 IDPKYTDQQLRTTVALPKGTGRSIRIAVITRGEKVAEAKAAGAELVGDEELVDSIAGGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTTDVTNAINEFKAGKLEFRADRSGIVHVQFGKASFSADDLLENLKSVQETVDRNKPSGAKGRYWKSLYITSTMGPSVEVDFSALQD 230
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.521e-62 Identity = 112/185 (60.54%), Postives = 150/185 (81.08%), Query Frame = -3 Query: 222 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKL 776 IDPKY DQQLR TV+LPKGTG+ V+VAV+A+GEK EA NAGAD+VG ++LI++I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP+PK GTVT ++ AI EFK GK+E+RAD+TGIVH+ FGK F +DLL+N A ++I+ N+P GAKG YW++ Y+ ++MGPSI ++I + D+KL Sbjct: 50 IDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIRVDINALRDYKL 234
BLAST of CB293216 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 5.615e-62 Identity = 112/188 (59.57%), Postives = 147/188 (78.19%), Query Frame = -3 Query: 213 IDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKGDFFEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIGLNIKEMLDFKLPSN 776 IDPKY+DQQ+R TVSLPKGTG++V+VAVLA+GEK EA +AGAD+ G ++LIE+I+ G M+FD LIA+PDMM K+A LGK LGPRGLMP+PK GTVT ++ A+ EFK GK+E+RAD+TGIVH+ FGK F DDLL N A ++I+ N+P GAKG +W++ ++ SSMGPSI ++I + D K N Sbjct: 51 IDPKYSDQQIRTTVSLPKGTGQTVRVAVLARGEKVKEATDAGADIAGSEELIEEIQKGMMDFDVLIATPDMMPKIARLGKQLGPRGLMPSPKGGTVTADLAAAVNEFKAGKLEFRADRTGIVHVMFGKASFSADDLLANLKALQETIDRNRPSGAKGRFWRTVFVSSSMGPSIPVDINALRDLKFEDN 238 The following BLAST results are available for this feature:
BLAST of CB293216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB293216 ID=CB293216; Name=CB293216; organism=Citrus sinensis; type=EST; length=781bpback to top |