CB293217

Overview
NameCB293217
Unique NameCB293217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.753e-68
Identity = 129/179 (72.07%), Postives = 144/179 (80.45%), Query Frame = 3
Query:  243 SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 755
            S+E L+++THKVYFD+E+ GK  GRIVMGLFGK VPKTV        GEKGIGK+GK L+YKGSSFHRIIPSFM+Q            ESI+GE FADENFKLKHTGPG LSMANAG DTNGSQFFITTV TSWLDGRHVVFGKV++GMDVV K+EAEG QSG PKSKVVI +SGE+ L
Sbjct:   26 SKENLKEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGELPL 204          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 9.814e-68
Identity = 127/179 (70.95%), Postives = 146/179 (81.56%), Query Frame = 3
Query:  243 SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 755
            ++E+L++VTHKVYFD+E+ GK  GR+V+GLFGKAVPKT         GEKG+GKSGK L+YKGS FHRIIPSFMIQ            ESI+G+ FADENFKLKHTGPGVLSMAN+G DTNGSQFFITTV TSWLDGRHVVFGKV+ GMDVV KIEAEG+QSG PKSKVVI++SGE+ L
Sbjct:   23 AKEDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGELPL 201          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.617e-56
Identity = 106/171 (61.99%), Postives = 128/171 (74.85%), Query Frame = 3
Query:  261 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 749
            K+T+KV+FDIE+  KP GRIV GL+GK VPKTV        GEKG+G SGK L+YK S FHRIIP+FMIQ            ESI+G+ F DENFK+KH+ PG+LSMANAGP+TNGSQFFITTV+TSWLDGRH VFG+V+ GMD+V+ +E+ G QSG P     ISNSGE+
Sbjct:   27 KITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.595e-52
Identity = 99/167 (59.28%), Postives = 122/167 (73.05%), Query Frame = 3
Query:  273 KVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 749
            +V+FDI + GKP GRIVM L+   VPKT         GEKG+GKSGK L++KGS FHRIIP FMIQ            ESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV T+WLDG+HVVFG+V+ G+D+V K+E  G  SG PKS+ +I++ G++
Sbjct:    5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.893e-51
Identity = 99/167 (59.28%), Postives = 121/167 (72.46%), Query Frame = 3
Query:  273 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVG--------EKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 749
            KV+FDI +GGK  GRIVM L+   VPKT G        E GIGKSGK L++KGS FHRIIP+FMIQ            ESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV T WLDG+HVVFG+V+ G+DVV+ +E+ G QSG+P    +I++ G++
Sbjct:    5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.410e-50
Identity = 101/167 (60.48%), Postives = 118/167 (70.66%), Query Frame = 3
Query:  273 KVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 749
            KV+FDI +GGK  GRIVM L+   VPKT         GEKG GKSGK L++KGS FHRIIP FMIQ            ESI GE F DENFK KHTGPGVLSMAN G +TNGSQFF+ TV T+WLDG+HVVFGKV+ GMDVV+ IE++G + G P +  VI++ GEM
Sbjct:    5 KVFFDITIGGKKGGRIVMELYNDIVPKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRIIPEFMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 9.228e-50
Identity = 105/167 (62.87%), Postives = 118/167 (70.66%), Query Frame = 3
Query:  261 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVGEK-GIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 755
            KVT KVYFD+E+GGKPIGRIV+GLFGK VPKT      + K  K   Y GS FHR+I  FMIQ             SI+GE FADENFKLKH G G LSMANAG DTNGSQFFITTV T WLDGRHVVFGK+L GMDVVRKIE   +  G+ PK  V+I+ SG +A+
Sbjct:   26 KVTDKVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAV 192          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.273e-48
Identity = 95/168 (56.55%), Postives = 115/168 (68.45%), Query Frame = 3
Query:  273 KVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 752
            +V+FD+ VGG+P GRIVM LF    P+T         GEKG G+SGK L+YK SSFHR+IP FM Q            ESI+G  FADENF  KHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFG+V+ GMDVV+ IE  G  SG    KVV+ + G+++
Sbjct:    5 RVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.969e-48
Identity = 102/172 (59.30%), Postives = 120/172 (69.77%), Query Frame = 3
Query:  261 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEM 749
            KVT+KVYFDI+ G K +GRIV+GL+G+ VPKTV        GEKG G       YK S FHR+I  FMIQ            +SI+GE FADENFKL+HTGPG+LSMANAG DTNGSQFFITTV TSWLDGRHVVFGKV+ GMDVV  IE      G+ P + V+I++ GE+
Sbjct:   27 KVTNKVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALATGEKGYG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.969e-48
Identity = 94/168 (55.95%), Postives = 119/168 (70.83%), Query Frame = 3
Query:  273 KVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 752
            KV+FD+ +GG P G+IVM L+    PKT         GEKG+G+SGK L++KGSSFHR+IP+FM Q            ESI+G  F DENF+ KHTGPG+LSMANAG +TNGSQFFI TV T WLDG+HVVFG+V+ G+DVV+ IE  G  SG+P   VVI++ GE++
Sbjct:    6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
The following BLAST results are available for this feature:
BLAST of CB293217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
CP20A_ARATH5.753e-6872.07Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CP19D_ARATH9.814e-6870.95Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIB_DICDI8.617e-5661.99Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
CYP7_CAEEL2.595e-5259.28Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
CYP3_CAEEL4.893e-5159.28Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
CYP2_CAEEL5.410e-5060.48Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
CYP5_CAEEL9.228e-5062.87Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
CYPH_CATRO2.273e-4856.55Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
PPIB_ORPSP2.969e-4859.30Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
CP19B_ARATH2.969e-4855.95Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05da06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05da06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293217 ID=CB293217; Name=CB293217; organism=Citrus sinensis; type=EST; length=822bp
GCCCGTGGGATCTTTCATGTTTCAGTTCACTCTCAAGTCTCACAAGAAAC
CAAGCAGCGGTTTCATCTGAACACGACAACAACAATCATCATCGGAGAGA
GATGGCTACAAAGACAAGATTGGTCTCAGTCGCTCTTTTGTGGGCTCTGG
TTCTTTTTCTAACCCTAGCTTTCATTCAGAATCGTTTAAGCGATGTTGGG
ATCTCATCACAGAAGAAAATTCATAACAGTGAGGAAGGCAACTCAAGAGA
GGAATTGGAAAAAGTGACCCACAAAGTTTACTTTGATATCGAGGTTGGTG
GGAAACCCATTGGTCGCATAGTTATGGGCCTATTTGGGAAGGCTGTCCCT
AAAACTGTAGGGGAGAAAGGAATTGGGAAGAGTGGGAAAACACTTTATTA
TAAAGGGAGCTCATTTCACAGGATTATTCCAAGCTTTATGATCCAGGGCG
GTGATTTTACTCTTGGTGATGGGCGTGGTGGAGAGTCAATATTTGGGGAA
AGTTTTGCTGATGAGAACTTTAAACTGAAGCACACTGGACCAGGAGTTCT
GTCGATGGCAAATGCTGGGCCAGACACCAATGGGTCACAGTTCTTCATTA
CGACTGTCATAACTAGCTGGTTGGATGGCCGCCATGTTGTGTTTGGCAAA
GTGCTCTCTGGGATGGACGTTGTCCGCAAAATTGAAGCGGAAGGAAGGCA
GAGTGGGGAGCCCAAAAGTAAAGTTGTTATATCTAACAGTGGTGAAATGG
CTTTGTGACAGACCATCCTTATTAAATTTTTATATGGAAATTGATAACTT
GTCCTATATTTGTGCTATCTGT
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