CB293218

Overview
NameCB293218
Unique NameCB293218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3506 contig Csv1_Contig3506:123..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293218 vs. ExPASy Swiss-Prot
Match: KHSE_PROVI (Homoserine kinase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=thrB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.668e-30
Identity = 85/202 (42.08%), Postives = 112/202 (55.45%), Query Frame = -2
Query:  140 NEMFGNKLLPDELVLAGLESEAKVSGF-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAAFPAEVGMPLHIWNCTQAGALVAAVLNGDPVGLGKALSSDKIVDPNRAPLIPGMEPVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFW-KEGNLKAVSMVKRLDRVGAR 739
            NE+ G      ELV   +E E    G  HADN APAI+G FVLIRSY PLDL+ +  PEK  L   LV P  E  T   R+  P ++ +          GALVA +L  D   +G++L  D + +P RAPLIPG   VK+ A+ AGA GC+I+G+GP+  A  D+ E     GE M +AF   + +LK+   V  + R GAR
Sbjct:  120 NELLGRPCTKMELVHFAIEGERVACGSAHADNAAPAILGNFVLIRSYTPLDLIVIPPPEK--LFCSLVHPHTELRTSFARSVLPTDITLKDATRQWGNVGALVAGLLTSDYALVGRSLV-DVVAEPKRAPLIPGFAEVKEAALNAGALGCSIAGSGPSIFAFSDSAETAHAAGEAMQKAFLASKKSLKSDMWVSPICREGAR 318          
BLAST of CB293218 vs. ExPASy Swiss-Prot
Match: KHSE_CHLPD (Homoserine kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=thrB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.263e-29
Identity = 82/202 (40.59%), Postives = 111/202 (54.95%), Query Frame = -2
Query:  140 NEMFGNKLLPDELVLAGLESEAKVSGF-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAAFPAEVGMPLHIWNCTQAGALVAAVLNGDPVGLGKALSSDKIVDPNRAPLIPGMEPVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAF-WKEGNLKAVSMVKRLDRVGAR 739
            NE+ G      ELV   +E E    G  HADN APAI+G FVLIRSY PLDL+ +  PE   L   LV P  E  T   R+  P  + +          GAL+A +L  D   +G+AL  D + +P RAPLIPG   VK  A++ GA GC+I+G+GP+  A   ++E  + +G+ M EAF   E NLK+   V  + + GA+
Sbjct:  120 NELLGQPCSKMELVHFAVEGERVACGSAHADNAAPAILGNFVLIRSYAPLDLITIPSPE--HLFCTLVHPHTELKTSFARSVLPRSIPLKTATQQWGNVGALIAGLLKSDYDLIGRALV-DVVAEPKRAPLIPGFLDVKHAAIDCGALGCSIAGSGPSVFAFSSSKETAERVGQAMREAFLLPETNLKSDMWVSPICKEGAK 318          
BLAST of CB293218 vs. ExPASy Swiss-Prot
Match: KHSE_CHLTE (Homoserine kinase OS=Chlorobium tepidum GN=thrB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.381e-28
Identity = 73/180 (40.56%), Postives = 101/180 (56.11%), Query Frame = -2
Query:  203 NEMFGNKLLPDELVLAGLESEAKVSGF-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAAFPAEVGMPLHIWNCTQAGALVAAVLNGDPVGLGKALSSDKIVDPNRAPLIPGMEPVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAF 739
            NE+FG+     ELV   +E E    G  HADN APA++G F+LIRSY PLDL+ +  P  K L   LV P  E  T   R+  P  + +          GAL+A +L  D   +G+AL  D + +P RAPLIPG   VK+ A++AGA GC+I+G+GP+  A   + +  + +G  M  AF
Sbjct:  120 NELFGSPCTKMELVHFAIEGERVACGSAHADNAAPAMLGNFILIRSYNPLDLITIKPP--KNLFGTLVHPHTELKTSFARSVLPKSIPLSTATQQWGNVGALIAGLLMEDYDLIGRALV-DVVAEPKRAPLIPGFNEVKQAALDAGALGCSIAGSGPSVFAFSSSRQTAEAVGSAMQSAF 296          
BLAST of CB293218 vs. ExPASy Swiss-Prot
Match: KHSE_CHLT3 (Homoserine kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=thrB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.305e-28
Identity = 78/201 (38.81%), Postives = 111/201 (55.22%), Query Frame = -2
Query:  140 NEMFGNKLLPDELVLAGLESEAKVSG-FHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAAFPAEVGMPLHIWNCTQAGALVAAVLNGDPVGLGKALSSDKIVDPNRAPLIPGMEPVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDRVGAR 739
            N + G+     ELV   +E E    G  HADN APA++G F+L RSY+PLDL+ ++ P   +L   LV P  E PT   R+    E+ +   +      GALVA +L  D   +G+AL  D + +P RAPLIPG   VK  A++AGA G +I+G+GP+  A  D+  K + I + M E F K  NL++      + R G+R
Sbjct:  120 NSLLGSPCTKMELVPFVMEGERIACGSIHADNAAPAMLGNFILTRSYDPLDLIPISTPP--ELYCSLVHPHIEVPTSHARSILKKEIALSSAVRQWGNVGALVAGLLRCDYELIGRALE-DVVAEPVRAPLIPGFYDVKHAALDAGALGGSIAGSGPSIFAFSDSLAKAETIAKAMQETFRKVSNLESDIWFCPVSREGSR 317          
BLAST of CB293218 vs. ExPASy Swiss-Prot
Match: KHSE_CHLPB (Homoserine kinase OS=Chlorobium phaeobacteroides (strain BS1) GN=thrB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.865e-27
Identity = 73/180 (40.56%), Postives = 98/180 (54.44%), Query Frame = -2
Query:  203 NEMFGNKLLPDELVLAGLESEAKVSGF-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAAFPAEVGMPLHIWNCTQAGALVAAVLNGDPVGLGKALSSDKIVDPNRAPLIPGMEPVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAF 739
            NE+ G      ELV   +E E    G  HADN APA++G FVLIRSY P+DL+ +  P+   L   LV P  E  T   R+  P  + +          GAL++ +L  D   +G++L  D I +P RAPLIPG   VK  A+EAGA GC+I+G+GP+  A   + E    +GE M  AF
Sbjct:  120 NELMGRPCNKMELVNFAIEGERVACGSAHADNAAPAMLGNFVLIRSYNPIDLITIPSPDN--LYCTLVHPHIEVRTAYARSVLPRMISLKTATEQWGNVGALISGLLTSDYELIGRSLV-DVIAEPKRAPLIPGFYDVKHAALEAGAIGCSIAGSGPSIFAFSSSPETASRVGEAMQTAF 296          
BLAST of CB293218 vs. ExPASy Swiss-Prot
Match: KHSE_PYRHO (Homoserine kinase OS=Pyrococcus horikoshii GN=thrB PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 73/188 (38.83%), Postives = 107/188 (56.91%), Query Frame = -2
Query:  152 DELVL-AGLESEAKVSGF-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAAFPAEVGMPLHIWNCTQAGALVAAVLNGDPVGLGKALSSDKIVDPNRAPLIPGMEPVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKAVSMVKRLDR 709
            DEL+L A ++ E K SG  H DN+ P+  GGF +I S  PL   R++F + K L  V+V PE E PT K R   P+ V +   + N   A +L+ A+  GD   +G+ L  D +  P R  L+P  + +++VA+E GAYG T+SG+GP   A+ +N    K IG+ +VE F +E  +KA   V +  R
Sbjct:  111 DELILKAAMKGEEKASGEPHPDNVVPSYYGGFTVIESKSPL---RVHFVDAK-LRGVVVLPEVEIPTAKARKILPSMVPLKDAVKNIAMASSLILALKEGDLETIGRLLD-DNLALPYRKKLMPWFDEIRRVALETGAYGITVSGSGPALFAIGENL---KDIGKTIVEKF-EELGIKAEYWVTKTGR 289          
BLAST of CB293218 vs. ExPASy Swiss-Prot
Match: KHSE_PYRAB (Homoserine kinase OS=Pyrococcus abyssi GN=thrB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22
Identity = 67/170 (39.41%), Postives = 98/170 (57.65%), Query Frame = -2
Query:  209 DELVL-AGLESEAKVSGF-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAAFPAEVGMPLHIWNCTQAGALVAAVLNGDPVGLGKALSSDKIVDPNRAPLIPGMEPVKKVAVEAGAYGCTISGAGPTAVAVVDN-EEKGKVIGEKMVE 709
            DEL++ A LE E   SG  H DN+ P+  GGF ++ S  PL + R++     +L  V+V PE E PTK+ R   P +V +   I N   A +LV A+  GD   +G+ L  D +  P R  L+P  + V+K  +EAGAYG T+SG+GP+  A+ +N ++ GK + EK  E
Sbjct:  111 DELIIMAALEGEKAASGSPHGDNVIPSYYGGFNILESLNPLRVHRVDV----ELNVVVVLPEVEVPTKEARRIVPEKVPLKDAIKNLAMASSLVLALKEGDIETVGRLLD-DNLALPYRKKLMPWFDEVRKAGLEAGAYGVTVSGSGPSLFAIGENLKDIGKAMKEKFEE 275          
BLAST of CB293218 vs. ExPASy Swiss-Prot
Match: KHSE_PYRIL (Homoserine kinase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=thrB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 68/177 (38.42%), Postives = 97/177 (54.80%), Query Frame = -2
Query:  179 AGLESEAKVSGFHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPE---FEAPTKKMRAAFPAEVGMPLHIWNCTQAGALVAAVLNGDP--VGLGKALSSDKIVDPNRAPLIPGMEPVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKA 694
            AGL   A     H DN+A A +GG V+I S +PL+L++       +L+FV+  P+       TK MR+  P EV    ++    +  ALVA     DP  V LG    SD++V+P RAP +P    VK+ A+EAGA   +ISGAGP+ +A+V  EEK   + +  VE  + E  L+A
Sbjct:  115 AGLGEVAAAGSPHFDNVAAAALGGAVVIASVKPLELVKF----MPKLIFVIGVPDVPPMPEKTKVMRSVLPREVSFRTYVAQLARVSALVAGFAKSDPRLVALGM---SDEVVEPARAPYVPAYGRVKRYALEAGALAVSISGAGPSIIALV--EEKNSDVVKAAVERAYIEEGLRA 282          
BLAST of CB293218 vs. ExPASy Swiss-Prot
Match: KHSE_THENV (Homoserine kinase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=thrB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 65/174 (37.36%), Postives = 94/174 (54.02%), Query Frame = -2
Query:  179 AGLESEAKVSGFHADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAAFPAEVGMPLHIWNCTQAGALVAAVLNGDP--VGLGKALSSDKIVDPNRAPLIPGMEPVKKVAVEAGAYGCTISGAGPTAVAVVDNEEKGKVIGEKMVEAFWKEGNLKA 694
            AGL   A     H DN+A A +GG V+I S +PL+L++ + P    ++ V   P     TK MR+  P EV    ++    +  ALVA     DP  V LG    SD++V+P RAP +P    V++ A+EAGA    ISGAGP+ +A+V++ + G V     VE  + E  L+A
Sbjct:  115 AGLGEAAAAGSPHFDNVAAAALGGAVVIASVKPLELVKFS-PRLTFVVGVPDVPPMPEKTKVMRSVLPREVPFRTYVAQLARVSALVAGFARSDPRLVALGM---SDEVVEPARAPHVPAYARVRRYALEAGALAVAISGAGPSMIALVEDRDSGAV--RAAVERAYAEEGLRA 282          
BLAST of CB293218 vs. ExPASy Swiss-Prot
Match: KHSE_METMP (Homoserine kinase OS=Methanococcus maripaludis GN=thrB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.317e-20
Identity = 66/166 (39.76%), Postives = 90/166 (54.22%), Query Frame = -2
Query:  245 NEMFGNKLLPDELVLAGLESEAKVSGF-HADNIAPAIMGGFVLIRSYEPLDLMRLNFPEKKQLLFVLVTPEFEAPTKKMRAAFPAEVGMPLHIWNCTQAGALVAAVLNGDPVGLGKALSSDKIVDPNRAPLIPGMEPVKKVAVEAGAYGCTISGAGPTAVAVVDNE 739
            NE+F  KL   ELV      EA  +G  HADN+APAI GGF L  SYEPL++  L+ P   ++L  L  P  +  TK  R   P E+ +   + N  +A  +V A+ N D    G+ +S D +V+P RA LI G   VK+  V+   YG TISG+GP  + +   E
Sbjct:  109 NELFELKLSKLELVKYSSLGEAVAAGAPHADNVAPAIFGGFTLTTSYEPLEV--LHIPVDLEVLVAL--PNIQVSTKTAREILPKEIPIKDMVNNVGKAAGMVYALYNNDLDLFGRYMSKDCVVEPCRANLIDGYTEVKE-KVKDMVYGITISGSGPAIITIPKKE 269          
The following BLAST results are available for this feature:
BLAST of CB293218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
KHSE_PROVI9.668e-3042.08Homoserine kinase OS=Prosthecochloris vibrioformis... [more]
KHSE_CHLPD1.263e-2940.59Homoserine kinase OS=Chlorobium phaeobacteroides (... [more]
KHSE_CHLTE2.381e-2840.56Homoserine kinase OS=Chlorobium tepidum GN=thrB PE... [more]
KHSE_CHLT35.305e-2838.81Homoserine kinase OS=Chloroherpeton thalassium (st... [more]
KHSE_CHLPB5.865e-2740.56Homoserine kinase OS=Chlorobium phaeobacteroides (... [more]
KHSE_PYRHO1.145e-2238.83Homoserine kinase OS=Pyrococcus horikoshii GN=thrB... [more]
KHSE_PYRAB1.952e-2239.41Homoserine kinase OS=Pyrococcus abyssi GN=thrB PE=... [more]
KHSE_PYRIL2.819e-2138.42Homoserine kinase OS=Pyrobaculum islandicum (strai... [more]
KHSE_THENV8.203e-2137.36Homoserine kinase OS=Thermoproteus neutrophilus (s... [more]
KHSE_METMP5.317e-2039.76Homoserine kinase OS=Methanococcus maripaludis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05da07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05da07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293218 ID=CB293218; Name=CB293218; organism=Citrus sinensis; type=EST; length=779bp
CCATTGGTTCAGCATTCACCAAGCAAACCACACTCCATTCCGGCCTTATT
AGCGAAGCAATCATCACAAAATTTCTAAAACACATTCATTCATCTTCATA
TTTTCACATTCATCTGGGAGCCCGGACACTCCCAACAGGCCTGGCACCAA
CTCTATCCAATCTCTTAACCATAGACACCGCCTTCAAATTCCCTTCTTTC
CAAAACGCCTCCACCATCTTCTCTCCAATCACCTTCCCTTTCTCTTCATT
ATCCACTACCGCCACCGCCGTGGGCCCGGCCCCGCTGATGGTGCACCCGT
ACGCTCCCGCCTCAACTGCTACCTTCTTCACCGGCTCCATTCCCGGAATC
AATGGGGCCCGGTTTGGGTCCACAATCTTATCCGAGGACAAGGCCTTCCC
CAGCCCCACCGGGTCCCCGTTCAAAACTGCCGCCACCAACGCCCCCGCCT
GGGTGCAGTTCCAAATGTGGAGCGGCATCCCCACCTCCGCCGGAAACGCT
GCCCGCATTTTCTTGGTCGGCGCCTCGAATTCCGGAGTTACTAAAACAAA
AAGAAGTTGCTTTTTCTCAGGAAAATTTAGTCTCATCAAATCTAACGGCT
CGTAACTACGAATCAAAACGAAACCACCCATGATCGCAGGAGCAATGTTA
TCAGCGTGGAAACCGGACACTTTAGCTTCCGATTCCAAGCCGGCGAGAAC
TAGTTCATCCGGGAGTAATTTATTTCCAAACATTTCGTTGACCGCTACCG
CAGTAGCCGCCGCACTGGCAGCGCTCGAT
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