CB293224

Overview
NameCB293224
Unique NameCB293224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.998e-63
Identity = 122/194 (62.89%), Postives = 150/194 (77.32%), Query Frame = -3
Query:  209 READIKNKMITPP---LKNLEGLLSTKVSFDTGSNFEADANETMDGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISRKHVRTE 781
            RE+DIKN+   PP   LKN EGL   K+     S   +     +D  LSWKD++W+++IT LPIL+KG+LT EDA  A++ G AGIIVSNHGARQLDY PATISALEEVV A +GR+P+ +DGGVRRGTDVFKALALGA  + IGRPVV+ LAA+GE GVR+V++ML+DEFELTMAL+GC S+K ISR H+ TE
Sbjct:  164 RESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE 357          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.943e-62
Identity = 120/194 (61.86%), Postives = 150/194 (77.32%), Query Frame = -3
Query:  209 READIKNKMITPP---LKNLEGLLSTKVSFDTGSNFEADANETMDGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISRKHVRTE 781
            RE+DIKN+   PP   LKN EGL   K+     S   +     +D  LSWKD++W+++ITN+PIL+KG+LT EDA  A++ G AGIIVSNHGARQLDY PATISALEEVV A +GRVP+ +DGGVRRGTDVFKALALGA  + IGRPVV+ LAA+GE GV++V++ML+DEFELTMAL+GC S+  I+R H+ TE
Sbjct:  164 RESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTE 357          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.149e-61
Identity = 118/194 (60.82%), Postives = 149/194 (76.80%), Query Frame = -3
Query:  209 READIKNKMITPP---LKNLEGLLSTKVSFDTGSNFEADANETMDGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISRKHVRTE 781
            READIKN+ + PP   LKN EG+   K+     S   +     +D  LSWKD+ W+++IT+LPIL+KG++T EDA  AV+ G AGIIVSNHGARQLDY PATI ALEEVV A +GR+P+ +DGGVRRGTDVFKALALGA  V IGRPVV+ LAA+GE GV++V++M++DEFELTMAL+GC S+K ISR H+  +
Sbjct:  164 READIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAAD 357          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.489e-49
Identity = 97/192 (50.52%), Postives = 139/192 (72.40%), Query Frame = -3
Query:  215 DIKNKMITPPLKNLEGLLSTKVSFDTGSNFEADAN------ETMDGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISRKHVR 772
            D++N+   PP   ++   ++ +SF    NF  D+       + +D  +SW+D++W+R +T+LPI+ KGIL  +DA +AV+ G+ GI+VSNHGARQLD  PATI  L E+V AV+G+V + +DGGVR+GTDV KALALGA+AV +GRP+V+GLA +GE GV+ V+E+LK+EF L MAL+GC +VK I +  VR
Sbjct:  170 DVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 361          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.597e-48
Identity = 96/192 (50.00%), Postives = 137/192 (71.35%), Query Frame = -3
Query:  215 DIKNKMITPPLKNLEGLLSTKVSFDTGSNFEADAN------ETMDGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISRKHVR 772
            D++N+   PP   ++   +  ++F    NF  ++       + +D  LSW D+ W+R +T+LPI++KGIL  +DA +AV+ GV GI+VSNHGARQLD  PATI  L E+V AV+G+V + +DGGVR+GTDV KALALGA+AV +GRP+++GLA +GE GV+ V+E+LK+EF L MAL+GC +VK I +  VR
Sbjct:  170 DVRNRFKLPPQLRMKNFETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDITWLRRLTSLPIVVKGILRGDDAKEAVKHGVDGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 361          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.547e-43
Identity = 85/145 (58.62%), Postives = 113/145 (77.93%), Query Frame = -3
Query:  227 MDGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISR 661
            +D  + W+DL W +S+T LPI++KGILT+EDA  AV+  V GIIVSNHG RQLD  PA+I AL EVV AVKG+V + +DGG+R G DV KALALGA+ V +GRP+++GLA KGE+GV+ V+++LK+EF  +M LTGC SV  I++
Sbjct:  201 IDPSICWEDLSWFQSMTRLPIILKGILTKEDAELAVKHNVHGIIVSNHGGRQLDEVPASIDALTEVVAAVKGKVEVYLDGGIRTGNDVLKALALGAKCVFVGRPILWGLAYKGEHGVKEVLDILKNEFHTSMTLTGCRSVAEINQ 345          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.678e-43
Identity = 86/145 (59.31%), Postives = 110/145 (75.86%), Query Frame = -3
Query:  215 LSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISRKHVR 649
            L W DL W +SIT LPI++KGILT+EDA  AV+  V GIIVSNHG RQLD   A+I AL EVV AVKG++ + +DGGVR G DV KALALGA+ + +GRP+++GLA KGE+GV+ V+ +L +EF  +MALTGC SV  I+R  V+
Sbjct:  203 LCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQGIIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQ 347          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.470e-41
Identity = 92/183 (50.27%), Postives = 123/183 (67.21%), Query Frame = -3
Query:  230 EADIKNKMITPPLKNLEGLLSTKVSFDTGSNFEADANETMDGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIS 778
            EA+IK K +  P ++  GL  T +S  + S+              W DL  ++S+T LPI++KGILT+EDA  AV+  + GIIVSNHG RQLD  PA+I AL EVV AV G++ + MDGGVR G DV KALALGA+ + +GRP+++GLA KGE GV+ V+++LK+E    MAL+GC SV  IS
Sbjct:  176 EANIKLKDLRSPGESKSGL-PTPLSMPSSSS-------------CWNDLPLLQSMTRLPIILKGILTKEDAELAVKHNIRGIIVSNHGGRQLDEVPASIDALREVVAAVNGKIEVYMDGGVRTGNDVLKALALGARCIFLGRPIIWGLACKGEDGVKEVLDILKEELHTCMALSGCRSVAEIS 344          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.385e-41
Identity = 91/202 (45.05%), Postives = 126/202 (62.38%), Query Frame = -3
Query:  197 READIKNKMITP---PLKNLEGLLSTKVSFDTGSNFEADANE----TMDGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISRKHVRTEQERI 781
            R AD KN    P    LK  E L+         SN +   N+     +D  L+W DL+W++SIT LPIL+KGI+  +DA  A++ G  GIIVSNHG RQLD  P+TI  L  +   V+GRVP+++DGG+RRGTDV KALA GA AV IGRP+++GL+  G+ GV +V+ +L  E +L MALTG  ++  I+   +  + + I
Sbjct:  193 RTADFKNSFKLPNGLSLKIFEKLML--------SNLDGGLNQYIATMIDPSLTWNDLKWLKSITKLPILVKGIMCPKDAELALQYGADGIIVSNHGGRQLDTCPSTIEVLPYISKVVRGRVPLILDGGIRRGTDVLKALAFGANAVCIGRPIIWGLSTGGKDGVLKVLNLLNSELQLAMALTGITNISDINNSIIWDQNKYI 386          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 5.150e-39
Identity = 80/138 (57.97%), Postives = 103/138 (74.64%), Query Frame = -3
Query:  230 WKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIS 643
            W DL  ++SIT LPI++KGILT+EDA  A++  V GI+VSNHG RQLD   A+I AL EVV AVKG++ + MDGGVR GTDV KALALGA+ + +GRP+++GLA KGE GV+ V+++L  E    M L+GC SV  IS
Sbjct:  207 WNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEIS 344          
The following BLAST results are available for this feature:
BLAST of CB293224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX2_ARATH2.998e-6362.89Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH1.943e-6261.86Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX_SPIOL2.149e-6160.82Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
HAOX1_HUMAN5.489e-4950.52Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE1.597e-4850.00Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_BOVIN1.547e-4358.62Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_HUMAN7.678e-4359.31Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_MOUSE2.470e-4150.27Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
HAOX_DICDI9.385e-4145.05Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX2_RAT5.150e-3957.97Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05da12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05da12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293224 ID=CB293224; Name=CB293224; organism=Citrus sinensis; type=EST; length=783bp
CTTGCTAGAATTAAAAATTAATCCATTACAATGCAATACCCAATGTTGTA
TCATATTATTATAATTCCATACTATTACAATACAAAATAATACAATACAA
CTGTATTAAAATAATACAATACAACATAATATAATAGAGTGTGTCAAACA
CACCCTTAAACATTTCTGCAACAAAATAATATTACAGCATCGAATGGATT
CTCTCCTGCTCAGTTCTCACATGCTTCCTGGAAATATGTTTCACACTAGG
ACAGCCAGTAAGGGCCATGGTCAACTCAAACTCATCCTTCAGCATTTCGA
TGACGCGTCTCACCCCATATTCCCCTTTTGCAGCAAGGCCGTAAACTACA
GGCCTTCCAATAAGTACAGCTTGTGCACCGAGGGCCAATGCCTTGAAAAC
ATCTGTTCCTCGCCGCACTCCTCCATCCATAAGAATTGGAACTCTTCCTT
TAACGGCATGAACCACCTCTTCCAGAGCAGAAATAGTGGCAGGACTATAA
TCTAACTGTCGAGCTCCGTGATTGGAGACAATAATCCCAGCAACACCTAC
TTCCACAGCTTTTATTGCATCTTCACGAGTAAGTATCCCCTTGATCAAAA
TTGGTAAGTTTGTAATAGATCTTACCCATTCTAAATCCTTCCAACTTAAA
AAACCATCCATGGTCTCGTTGGCATCAGCTTCAAAATTCGAACCTGTATC
AAAGCTGACTTTGGTTGATAAGAGGCCTTCCAAATTCTTCAACGGCGGCG
TAATCATTTTGTTCTTTATATCTGCCTCCCTTC
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