CB293225

Overview
NameCB293225
Unique NameCB293225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10008 contig Csv1_Contig10008:1..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293225 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.616e-73
Identity = 143/255 (56.08%), Postives = 181/255 (70.98%), Query Frame = 2
Query:   86 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGA 841
            E  N+NE++ +A+  LPKM YD+YA GAED+ TL EN  AF RI FR RIL+DV+ ID++TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++  TIM LS                 RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP   LKN EG+   K+     S   +     +D SLSWKD+ WL++IT+LPIL+KG++T EDA  AV+ G AGIIVSNHGA
Sbjct:    2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGA 256          
BLAST of CB293225 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.158e-71
Identity = 138/255 (54.12%), Postives = 179/255 (70.20%), Query Frame = 2
Query:   86 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGA 841
            E  N+ E+  +A+  LPKM YD+YA GAED+ TL+EN  AF RI FR RIL+DVS+ID++TT+L +KIS PI++APTA+ K+A+P+GE ATARAA++  TIM LS                 RF+QLYV+K R++   LV+RAER GFKA+ LT DTPRLGRRE+DIKN+   PP   LKN EGL   K+     S   +     +D +LSWKD++WL++IT LPIL+KG+LT EDA  A++ G AGIIVSNHGA
Sbjct:    2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA 256          
BLAST of CB293225 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.369e-71
Identity = 136/255 (53.33%), Postives = 178/255 (69.80%), Query Frame = 2
Query:   86 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGA 841
            E  N+ E+  +A+  LPKM YD+YA GAED+ TL+EN  AF RI FR RIL+DV++ID++TT+L +KIS PI++APTA  K+A+P+GE ATARAA++  TIM LS                 RF+QLYV+K R +   LV+RAE+ GFKA+ LT DTPRLGRRE+DIKN+   PP   LKN EGL   K+     S   +     +D +LSWKD++WL++ITN+PIL+KG+LT EDA  A++ G AGIIVSNHGA
Sbjct:    2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIAIQAGAAGIIVSNHGA 256          
BLAST of CB293225 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.125e-49
Identity = 101/255 (39.61%), Postives = 160/255 (62.75%), Query Frame = 2
Query:   98 LNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAN------ETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGA 841
            +N++++ A+  LPK  YD+Y  GA DE TL +N+ AF R     R+L +V+  DLST++L  ++S PI +  TA+ ++A+ +GE+AT RA  S  T M+L S+                R+ QLY++K R++T  LV++AE+ G+KA+ +T DTP LG R  D++N+   PP   ++   ++ +S     NF  D+       + +D S+SW+D++WLR +T+LPI+ KGIL  +DA +AV+ G+ GI+VSNHGA
Sbjct:    8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGA 262          
BLAST of CB293225 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.075e-49
Identity = 118/271 (43.54%), Postives = 158/271 (58.30%), Query Frame = 2
Query:   53 NSYSNRFQMAAEP-VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTGSNFEADANE----TMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHG 838
            N +SN+     +  V+++E  E A+  LPKM YD+YA G+ D+ TL EN  AF RI    R LVDVS+++  T I    IS PI+IAP A+ ++A+  GE+ T  A+   NTIM L S +                ++QLYVFK R ++  LV+RAE  G+ ALVLT DTP LG+R AD KN    P    LK  E L+         SN +   N+     +D SL+W DL+WL+SIT LPIL+KGI+  +DA  A++ G  GIIVSNHG
Sbjct:   18 NQFSNKKTNRLDSFVSVSELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLSSLSTTSVEDLSSATNGNPGWFQLYVFKDRKVSEELVKRAESIGYSALVLTVDTPFLGKRTADFKNSFKLPNGLSLKIFEKLML--------SNLDGGLNQYIATMIDPSLTWNDLKWLKSITKLPILVKGIMCPKDAELALQYGADGIIVSNHG 280          
BLAST of CB293225 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.431e-47
Identity = 103/257 (40.08%), Postives = 157/257 (61.09%), Query Frame = 2
Query:   92 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEG---LLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGA 841
            V ++++++  R  L K  YD+Y  GA D+ TL +N++AF R     R+L +V+ IDLST++L  ++S PI +  TA+  +A+ +GE+AT RA  +  T M+L S+                R+ QLY++K R+I+  +V+RAE+ G+KA+ +T DTP LG R  D++N+   PP   +KN E      S K +    S       + +D SLSW D+ WLR +T+LPI++KGIL  +DA +AV+ GV GI+VSNHGA
Sbjct:    6 VCISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQLRMKNFETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDITWLRRLTSLPIVVKGILRGDDAKEAVKHGVDGILVSNHGA 262          
BLAST of CB293225 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.289e-46
Identity = 110/250 (44.00%), Postives = 150/250 (60.00%), Query Frame = 2
Query:   92 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHG 838
            V L +F+E AR  L K  +DF  GGA+D  T  EN+ AF +I  R R L DVS++D+ TTI   +ISAPI IAPT  H+LA P+GE++TARAA + +   + S +                R++QLYV   R I   ++Q+ E  GFKALV+T D P++G R  DI N++    +K L  LL    S + G+         +D S+ W+DL W +S+T LPI++KGILT+EDA  AV+  V GIIVSNHG
Sbjct:    4 VCLTDFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLYVHPNRQINKQMIQKVESLGFKALVITVDVPKVGNRRNDITNQV--DLMKKL--LLKDLGSPEMGNVMPYFQMSPIDPSICWEDLSWFQSMTRLPIILKGILTKEDAELAVKHNVHGIIVSNHG 249          
BLAST of CB293225 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.511e-44
Identity = 111/250 (44.40%), Postives = 139/250 (55.60%), Query Frame = 2
Query:   92 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHG 838
            V L +FQ  AR  L K   DF  GGA+D  T  +N+ AF RI  R R L DVS +D  TTI   +ISAPI IAPT  H L  P+GE++TARAA +     + S F                R++QLYV     +   L+QR E  GFKALV+T DTP  G R  DI+N++     +NL   L+   S   G+         +  SL W DL W +SIT LPI++KGILT+EDA  AV+  V GIIVSNHG
Sbjct:    4 VCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWFQLYVHPDLQLNKQLIQRVESLGFKALVITLDTPVCGNRRHDIRNQL----RRNL--TLTDLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQGIIVSNHG 247          
BLAST of CB293225 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.972e-43
Identity = 109/253 (43.08%), Postives = 143/253 (56.52%), Query Frame = 2
Query:   92 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHG 838
            V L +F+  A+  L K  +DF  G A+D  T  EN+ AF RI  R R L D+S++D  TTI   +ISAPI I+PTA H +A P+GE +TARAA   N   V+ S+                R++QLY+    D    +VQRAE  GFKALV+T DTP LG R  D +N++       LK+L  L   K +     +F         AS  W DL  L+SIT LPI++KGILT+EDA  A++  V GI+VSNHG
Sbjct:    4 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFP-------KASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHG 249          
BLAST of CB293225 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.972e-43
Identity = 98/254 (38.58%), Postives = 144/254 (56.69%), Query Frame = 2
Query:   83 AEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS--FTXXXXXXXXXXXXXXXRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHG 838
            ++ +NL++F+ +AR  LP     +Y   A+DE TL+EN  A+HRI F  +IL+DV  +D+ST     K SAP  I+ TAL KL +PEGEVA A+ A   + + ++S   +               ++YQLYV   R IT   V+ AE  G K L +T D P LGRRE D+K K       +++G        D         +  +D SLSWKD+ +++SIT +PI+IKG+  +ED + A E G+ G+++SNHG
Sbjct:  185 SQMINLHDFETIARQILPPPALAYYCSAADDEVTLRENHNAYHRIFFNPKILIDVKDVDISTEFFGEKTSAPFYISATALAKLGHPEGEVAIAKGAGREDVVQMISTLASCSFDEIADARIPGQQQWYQLYVNADRSITEKAVRHAEERGMKGLFITVDAPSLGRREKDMKMKFEAD--SDVQG---DDEDIDRSQGASRALSSFIDPSLSWKDIAFIKSITKMPIVIKGVQRKEDVLLAAEHGLQGVVLSNHG 433          
The following BLAST results are available for this feature:
BLAST of CB293225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX_SPIOL1.616e-7356.08Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH1.158e-7154.12Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH3.369e-7153.33Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX1_HUMAN2.125e-4939.61Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX_DICDI8.075e-4943.54Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX1_MOUSE4.431e-4740.08Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_BOVIN1.289e-4644.00Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_HUMAN3.511e-4444.40Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_RAT2.972e-4343.08Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
CYB2_HANAN2.972e-4338.58Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05da12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05da12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293225 ID=CB293225; Name=CB293225; organism=Citrus sinensis; type=EST; length=842bp
GCACGTGGTTCGGGTTCATTTCTTTACAAAATTCTATTGTTTCAGTTTGA
TTAATAGTTATTCGAATCGGTTCCAAATGGCAGCTGAACCTGTTAATTTG
AATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGA
TTTCTACGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGG
AAGCCTTTCATAGAATTACGTTTCGGTCAAGAATTCTTGTCGATGTCAGC
AGAATTGATTTATCGACTACCATACTTGATTACAAAATCTCGGCTCCCAT
TATCATTGCTCCAACGGCTTTGCATAAGCTTGCAAACCCTGAAGGAGAGG
TAGCCACAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCC
TTCACATCTAGCAGCTCCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGT
TCGCTTCTATCAATTATATGTATTCAAGAAACGAGATATAACAGCTACTC
TAGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCT
GATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGAT
TACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCT
CTGATACAGGTTCGAATTTTGAAGCTGATGCCAACGAGACCATGGATGCT
TCTTTAAGTTGGAAGGATTTAGAATGGCTAAGATCTATTACAAACTTACC
AATTTTGATCAAGGGGATACTTACTCGTGAAGATGCAATAAAAGCTGTGG
AAGTAGGTGTTGCTGGGATTATTGTCTCCAATCACGGAGCTC
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