CB293260

Overview
NameCB293260
Unique NameCB293260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9362 contig Csv1_Contig9362:336..1145. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2)

HSP 1 Score: 379.022 bits (972), Expect = 1.669e-104
Identity = 187/235 (79.57%), Postives = 212/235 (90.21%), Query Frame = 2
Query:  104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNVR 808
            E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRARTGQGKTLAFVLPILESL NGP K+ +K GYGR+PSVLVLLPTRELAKQV  DFD YGG++GL+SCCLYGG  Y  QE KLK+G+D+V+GTPGRIKDHIER N+D S L+FRVLDEADEMLRMGFVEDVELILGKVED+ KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVG++KMKAS +VR
Sbjct:   91 EVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVR 325          
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.028e-95
Identity = 168/231 (72.73%), Postives = 198/231 (85.71%), Query Frame = 2
Query:  116 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNVR 808
            PNA++ FRIS  LREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPILESL NG  KAS++T YGR P+VLVLLPTRELAKQVH DF  YG   GL++CC+YGG+ Y +QE  ++KG+D+V+GTPGR+KD +E+G ++  SLKFRVLDEADEML MGFV+DVELILGKVED  KVQTLLFSAT+P WVK +S +FLKS KKT+DLVG EK+KAS +VR
Sbjct:  114 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVR 344          
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.465e-92
Identity = 169/235 (71.91%), Postives = 202/235 (85.96%), Query Frame = 2
Query:  104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNVR 808
            E+E PN++S FRIS PL++ L SKGI++LFPIQAMTFD V+DG DLVGRARTGQGKTLAFVLPI+ESL NG TK  +++G+GR PSVLVLLPTRELA QV  DF VYGGAVGLT+C +YGGAP+H+Q   L +G+D+V+GTPGR+KD +E+G + L SL FRVLDEADEML+MGFV+DVELILGKV+  +KVQTLLFSATLPSWVK IST+FLKS KKT+DLV  +KMKAS +VR
Sbjct:  102 EAEDPNSLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMKASISVR 336          
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.303e-52
Identity = 110/231 (47.62%), Postives = 148/231 (64.07%), Query Frame = 2
Query:  122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL---GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805
            A S F IS    + LK++G+  LFPIQA TF  V  G DL+ +ARTG GKT +F +P++E L  G  +  +    GRAP VLVL PTRELA QV +DF        L+  C YGG PY  Q  +++ GID+++GTPGRIKDH++ G +DL+ LK  VLDE D+ML MGF + VE IL    K +  +  QTLLFSAT P WV +++ K++KS  + +DL+G +  KA+  V
Sbjct:  183 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI--TKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITV 407          
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 3.303e-52
Identity = 110/231 (47.62%), Postives = 148/231 (64.07%), Query Frame = 2
Query:  122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL---GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805
            A S F IS    + LK++G+  LFPIQA TF  V  G DL+ +ARTG GKT +F +P++E L  G  +  +    GRAP VLVL PTRELA QV +DF        L+  C YGG PY  Q  +++ GID+++GTPGRIKDH++ G +DL+ LK  VLDE D+ML MGF + VE IL    K +  +  QTLLFSAT P WV +++ K++KS  + +DL+G +  KA+  V
Sbjct:  259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI--TKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITV 483          
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5)

HSP 1 Score: 204.527 bits (519), Expect = 5.634e-52
Identity = 113/241 (46.89%), Postives = 151/241 (62.66%), Query Frame = 2
Query:   92 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805
            QE    +   A S F IS    + LK +G+  LFPIQA TF  V  G DL+ +ARTG GKT +F +P++E L +G  +  K+   GRAP VLVL PTRELA QV +DF        L+  C YGG PY  Q  +++ GID+++GTPGRIKDHI+ G +DL+ LK  VLDE D+ML MGF + VE IL    K +  +  QTLLFSAT P WV +++ K++KS  + +DL+G +  K +  V
Sbjct:  177 QEIPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFSDI--TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITV 411          
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.091e-50
Identity = 107/228 (46.93%), Postives = 154/228 (67.54%), Query Frame = 2
Query:  122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805
            A+S   IS  + + L SKGIE LFPIQ    +  ++G D++GRARTG GKTLAF +PI++ +     K + K G GR P  LVL PTRELA+QV ++F     A  L + CLYGG P   Q  +L  G+DV +GTPGR+ D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+ +  K Q+++FSAT+PSW++ ++ K+L ++  T+DLVG    K +  +
Sbjct:  105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII----KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPE--KRQSMMFSATMPSWIRSLTKKYL-NNPLTVDLVGDSDQKLADGI 323          
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.175e-49
Identity = 108/232 (46.55%), Postives = 145/232 (62.50%), Query Frame = 2
Query:  122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805
            A S F IS    + LK +G+  LFPIQ  TF  V +G DL+ +ARTG GKT +F +P++E L        K     R+P VLVL PTRELA QV +DF D+      L+  C YGG  Y +Q  +++ GID+++GTPGRIKDH++ G +DLS L+  VLDE D+ML +GF E VE I+    K +  +  QTLLFSAT P WV  ++ K++KS  + +DLVG    KA+T V
Sbjct:  135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKS----RSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTV 359          
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.617e-49
Identity = 107/228 (46.93%), Postives = 153/228 (67.11%), Query Frame = 2
Query:  122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805
            A++   IS  + + LK +GIE LFPIQ    +  ++G D++GRARTG GKTLAF +PI++ +     K + K G G+ P  LVL PTRELA+QV ++F     A  L + CLYGG P   Q  +L  GIDV +GTPGRI D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+    K Q+++FSAT+PSW++ ++ K+L ++  TIDLVG    K +  +
Sbjct:  117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII----KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL--PAKRQSMMFSATMPSWIRSLTKKYL-NNPLTIDLVGDSDQKLADGI 335          
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.617e-49
Identity = 108/232 (46.55%), Postives = 144/232 (62.07%), Query Frame = 2
Query:  122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805
            A S F IS    + LK +G+  LFPIQ  TF  V +G DL+ +ARTG GKT +F +P++E L        K     R+P VLVL PTRELA QV +DF D+      L+  C YGG  Y +Q   ++ GID+++GTPGRIKDH++ G +DLS L+  VLDE D+ML +GF E VE I+    K +  +  QTLLFSAT P WV  ++ K++KS  + +DLVG    KA+T V
Sbjct:  138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKS----RSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTV 362          
The following BLAST results are available for this feature:
BLAST of CB293260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH7_ARATH1.669e-10479.57DEAD-box ATP-dependent RNA helicase 7 OS=Arabidops... [more]
RH7_ORYSJ7.028e-9572.73DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sat... [more]
RH7_SPIOL1.465e-9271.91DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia ... [more]
DDX21_RAT3.303e-5247.62Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=D... [more]
DDX21_MOUSE3.303e-5247.62Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 ... [more]
DDX21_HUMAN5.634e-5246.89Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 ... [more]
RH53_ARATH3.091e-5046.93DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
DDX50_MOUSE1.175e-4946.55ATP-dependent RNA helicase DDX50 OS=Mus musculus G... [more]
RH9_ARATH2.617e-4946.93DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
DDX50_HUMAN2.617e-4946.55ATP-dependent RNA helicase DDX50 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dc09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dc09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293260 ID=CB293260; Name=CB293260; organism=Citrus sinensis; type=EST; length=810bp
GCCCATAGAAGAGCCGGTGAATTTGAAATCGGAGAAGGAGAACCATAAGA
AGAAGAAAGCGAAAGTTGAGCCTGAGGCTGGAGTGGAAGAGCAGGAGAGG
GGTGAAAGCGAACATCCGAATGCGGTTTCGAGGTTTAGAATATCGGTGCC
ATTAAGGGAAAAGCTCAAGTCCAAGGGGATTGAGTCTTTGTTTCCTATTC
AAGCTATGACTTTTGATATGGTTCTTGATGGCTCTGATTTAGTCGGACGT
GCACGGACCGGTCAGGGTAAAACTTTAGCCTTTGTGTTGCCAATTTTAGA
GTCTCTAACGAATGGGCCAACAAAAGCGTCCAAGAAGACTGGATATGGCA
GGGCTCCAAGTGTTTTGGTGCTTTTGCCTACTAGGGAATTGGCCAAACAG
GTTCATGAGGACTTTGATGTCTATGGCGGGGCAGTGGGACTGACCTCATG
TTGCTTATATGGAGGAGCTCCTTATCATGCTCAGGAGTTTAAATTAAAGA
AAGGGATTGATGTAGTCATTGGAACCCCTGGACGTATTAAGGATCACATT
GAGAGGGGCAATATTGACTTGAGTTCATTGAAGTTTCGGGTCCTTGATGA
GGCTGATGAGATGCTTAGGATGGGTTTCGTTGAAGATGTTGAACTTATTC
TGGGTAAAGTCGAGGATGCTAATAAAGTTCAAACACTTCTCTTCAGTGCC
ACCTTGCCAAGCTGGGTGAAGCATATTTCCACCAAGTTTCTTAAATCAGA
CAAGAAAACCATAGATCTTGTTGGGCATGAGAAAATGAAGGCTAGTACCA
ATGTCCGGCA
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