CB293260
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2) HSP 1 Score: 379.022 bits (972), Expect = 1.669e-104 Identity = 187/235 (79.57%), Postives = 212/235 (90.21%), Query Frame = 2 Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNVR 808 E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRARTGQGKTLAFVLPILESL NGP K+ +K GYGR+PSVLVLLPTRELAKQV DFD YGG++GL+SCCLYGG Y QE KLK+G+D+V+GTPGRIKDHIER N+D S L+FRVLDEADEMLRMGFVEDVELILGKVED+ KVQTLLFSATLPSWVK+IS +FLK D+KTIDLVG++KMKAS +VR Sbjct: 91 EVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVR 325
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1) HSP 1 Score: 347.051 bits (889), Expect = 7.028e-95 Identity = 168/231 (72.73%), Postives = 198/231 (85.71%), Query Frame = 2 Query: 116 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNVR 808 PNA++ FRIS LREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPILESL NG KAS++T YGR P+VLVLLPTRELAKQVH DF YG GL++CC+YGG+ Y +QE ++KG+D+V+GTPGR+KD +E+G ++ SLKFRVLDEADEML MGFV+DVELILGKVED KVQTLLFSAT+P WVK +S +FLKS KKT+DLVG EK+KAS +VR Sbjct: 114 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVR 344
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1) HSP 1 Score: 339.347 bits (869), Expect = 1.465e-92 Identity = 169/235 (71.91%), Postives = 202/235 (85.96%), Query Frame = 2 Query: 104 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNVR 808 E+E PN++S FRIS PL++ L SKGI++LFPIQAMTFD V+DG DLVGRARTGQGKTLAFVLPI+ESL NG TK +++G+GR PSVLVLLPTRELA QV DF VYGGAVGLT+C +YGGAP+H+Q L +G+D+V+GTPGR+KD +E+G + L SL FRVLDEADEML+MGFV+DVELILGKV+ +KVQTLLFSATLPSWVK IST+FLKS KKT+DLV +KMKAS +VR Sbjct: 102 EAEDPNSLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMKASISVR 336
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 3.303e-52 Identity = 110/231 (47.62%), Postives = 148/231 (64.07%), Query Frame = 2 Query: 122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL---GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805 A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E L G + + GRAP VLVL PTRELA QV +DF L+ C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V Sbjct: 183 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI--TKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITV 407
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2) HSP 1 Score: 205.297 bits (521), Expect = 3.303e-52 Identity = 110/231 (47.62%), Postives = 148/231 (64.07%), Query Frame = 2 Query: 122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELIL---GKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805 A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E L G + + GRAP VLVL PTRELA QV +DF L+ C YGG PY Q +++ GID+++GTPGRIKDH++ G +DL+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G + KA+ V Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDI--TKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITV 483
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5) HSP 1 Score: 204.527 bits (519), Expect = 5.634e-52 Identity = 113/241 (46.89%), Postives = 151/241 (62.66%), Query Frame = 2 Query: 92 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805 QE + A S F IS + LK +G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PTRELA QV +DF L+ C YGG PY Q +++ GID+++GTPGRIKDHI+ G +DL+ LK VLDE D+ML MGF + VE IL K + + QTLLFSAT P WV +++ K++KS + +DL+G + K + V Sbjct: 177 QEIPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFSDI--TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITV 411
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 3.091e-50 Identity = 107/228 (46.93%), Postives = 154/228 (67.54%), Query Frame = 2 Query: 122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805 A+S IS + + L SKGIE LFPIQ + ++G D++GRARTG GKTLAF +PI++ + K + K G GR P LVL PTRELA+QV ++F A L + CLYGG P Q +L G+DV +GTPGR+ D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+ + K Q+++FSAT+PSW++ ++ K+L ++ T+DLVG K + + Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII----KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPE--KRQSMMFSATMPSWIRSLTKKYL-NNPLTVDLVGDSDQKLADGI 323
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.175e-49 Identity = 108/232 (46.55%), Postives = 145/232 (62.50%), Query Frame = 2 Query: 122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805 A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y +Q +++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKS----RSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTV 359
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 2.617e-49 Identity = 107/228 (46.93%), Postives = 153/228 (67.11%), Query Frame = 2 Query: 122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805 A++ IS + + LK +GIE LFPIQ + ++G D++GRARTG GKTLAF +PI++ + K + K G G+ P LVL PTRELA+QV ++F A L + CLYGG P Q +L GIDV +GTPGRI D ++RG ++LS ++F VLDEAD+ML++GF EDVE+IL K+ K Q+++FSAT+PSW++ ++ K+L ++ TIDLVG K + + Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII----KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL--PAKRQSMMFSATMPSWIRSLTKKYL-NNPLTIDLVGDSDQKLADGI 335
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 2.617e-49 Identity = 108/232 (46.55%), Postives = 144/232 (62.07%), Query Frame = 2 Query: 122 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDF-DVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILG---KVEDANKVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGHEKMKASTNV 805 A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E L K R+P VLVL PTRELA QV +DF D+ L+ C YGG Y +Q ++ GID+++GTPGRIKDH++ G +DLS L+ VLDE D+ML +GF E VE I+ K + + QTLLFSAT P WV ++ K++KS + +DLVG KA+T V Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKS----RSPKVLVLAPTRELANQVAKDFKDI---TRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTV 362 The following BLAST results are available for this feature:
BLAST of CB293260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB293260 ID=CB293260; Name=CB293260; organism=Citrus sinensis; type=EST; length=810bpback to top |