CB293270

Overview
NameCB293270
Unique NameCB293270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293270_ssr264 microsatellite CB293270_ssr264:264..275. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9908 contig Csv1_Contig9908:1200..2057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293270 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22
Identity = 67/165 (40.61%), Postives = 93/165 (56.36%), Query Frame = -3 
Query:  365 EEYLNFFDANDDNSEYLTFDASEIMGSGDNNFAQAPLTTEQVTEVTDQMSMAGQHQAEVHGNDVASTSEQKPDIVKSESDVKYPFLKQASQMLGNVAAAPAFASEFPTKDAVF*LNSLGHPSSSVHVSAGMIRIRNITLSG-SGLDWSVGKNGDMNIVFSFDLSQ 856
            E+YL+FFD      E LTFD S +MG  D    Q  L  +   +  ++    G+   E   +   S+S+Q  D    +S  KYPFLK+ S MLG +    +FAS+F TKDA+         S SVHV+AGM+RI N+TL+  SG+ WS  KNG++N+V SF + Q
Sbjct:  366 EDYLSFFD-----DEGLTFDDSLLMGPEDFLPNQEALDQKPAPKELEKEVAGGKEAVEEKESGEGSSSKQDTDFKDFDSAPKYPFLKKTSHMLGAIPTPSSFASQFQTKDAM--RLHAAQSSGSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLSFGVVQ 523
The following BLAST results are available for this feature:
BLAST of CB293270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NAC78_ARATH1.747e-2240.61NAC domain-containing protein 78 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05dd03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293270 ID=CB293270; Name=CB293270; organism=Citrus sinensis; type=EST; length=858bp
ACTACAACCTGTGGACATATTTAAAAGTTACAATGGAATAAAGTATATAA
CACCCCAACTTAATTTGACAGTCAAAAAGTTACATATAACAACATATCTG
CAACGAGGTGGTGTCCAAGTCAATAATCTATAAAGAAATATCAATATCAA
CTAACCCTATCAATTTAACCAGCAAATAAAGTTTTGGATGCAGTAATCCT
GTTTACTTGGCAAAGACACAGGCACCAATCTTAAAACCCACTGAAAGAAT
TATGATCCAAAGGAACAACAACAACCACAAGCTCCGGAACACCACCGACC
CTGTCTTACCAAAAAAAATGTTACCCGCCGGTTCAAAACTGGTAGGACTA
GGACTGATGACATTTTGTGACAGGTCAAAAGAAAAGACAATATTCATATC
CCCATTCTTGCCAACCGACCAGTCCAATCCACTTCCACTTAAAGTGATAT
TTCTGATTCTGATCATACCGGCAGAAACATGAACTGAACTGGACGGATGA
CCCAATGAATTGAGTCAAAAAACTGCATCCTTTGTAGGGAATTCCGAGGC
AAATGCAGGAGCAGCAGCAACGTTGCCCAACATTTGACTGGCCTGTTTGA
GGAAGGGATACTTGACATCTGATTCGGATTTGACAATATCTGGCTTTTGC
TCTGAAGTGGATGCAACATCATTACCATGTACTTCAGCTTGATGCTGGCC
AGCCATGGACATTTGATCAGTTACTTCAGTCACCTGCTCTGTTGTGAGAG
GTGCTTGGGCAAAATTGTTGTCTCCGCTCCCCATAATTTCAGAAGCATCA
AAAGTCAGGTACTCTGAGTTGTCATCATTAGCATCAAAAAAATTAAGGTA
CTCTTCAA
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