CB293284

Overview
NameCB293284
Unique NameCB293284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4585 contig Csv1_Contig4585:87..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293284 vs. ExPASy Swiss-Prot
Match: BIOB_ARATH (Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.631e-91
Identity = 168/218 (77.06%), Postives = 187/218 (85.78%), Query Frame = 3
Query:   36 MRALGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKIITTSSYDEHLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVILSAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPSFHEDEANVSKAESCQEAVSSS 689
            +R +GMEVCCTLGM+EKQQA+ELKKAGLTA+NHNLDTSREYYP +ITT SYD+ LETL HVR+AGINVCSGGIIGLGEAEEDR+G            ESVPINALLAVKGTPL+DQKPVEIWEMIRMI TARIVMPKAMV LSAGR+R SM EQALCFLAGANSIFTGEKLLTTPNN+F ADQLMFK LGL PK PSF ED+   S++E+C++  S+S
Sbjct:  163 IRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGIIGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSEDD---SESENCEKVASAS 377          
BLAST of CB293284 vs. ExPASy Swiss-Prot
Match: BIOB_CYTH3 (Biotin synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=bioB PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 9.011e-66
Identity = 130/212 (61.32%), Postives = 157/212 (74.06%), Query Frame = 3
Query:   45 LGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKIITTSSYDEHLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVILSAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPSFHEDEANVSKAESCQEAV 680
            +GMEVCCTLGML  +QA +LK AGL A+NHNLDTS E+Y K+ITT +YD+ LETL +VR A I+VCSGGIIG+GE+  DRVG            ESVP+NAL+ V+GTPL+DQ  V +WEM+RMIATARI+MPKAMV LSAGR+R +  EQALCFLAGANSIF G+KLLTTPN    AD+ MF+VL L P+  SF   +A   K E    A+
Sbjct:  125 MGMEVCCTLGMLTPEQADKLKDAGLYAYNHNLDTSAEHYDKVITTRTYDDRLETLDNVRNAKISVCSGGIIGMGESHGDRVGMLHTLANMVEHPESVPVNALVPVEGTPLEDQPRVSVWEMVRMIATARIIMPKAMVRLSAGRVRMNTEEQALCFLAGANSIFAGDKLLTTPNPEVNADKEMFQVLNLKPR-QSFKNGDAPKIKFEQIPSAL 335          
BLAST of CB293284 vs. ExPASy Swiss-Prot
Match: BIOB_FLAPJ (Biotin synthase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=bioB PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.667e-59
Identity = 109/193 (56.48%), Postives = 143/193 (74.09%), Query Frame = 3
Query:   45 LGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKIITTSSYDEHLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVILSAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAP 623
            L MEVCCTLGM+ + QA  L +AGL A+NHNLDTS EYY ++I+T  +++ +ET+ +VR+  + VCSGGIIG+GE+  DR G            ESVPINAL+AV+GTP++++KPVEIWEMIRM+AT RI+MP+  V LSAGR+  +   QA+CF AGANSIF G+KLLTTPN +   D  MF++LGL P+ P
Sbjct:  125 LDMEVCCTLGMITENQAHRLAEAGLYAYNHNLDTSEEYYKEVISTRGFEDRIETIANVRKTNVTVCSGGIIGMGESIGDRAGMLVALSTLSPQPESVPINALVAVEGTPMEEEKPVEIWEMIRMVATTRIIMPETQVRLSAGRMNMTREGQAMCFFAGANSIFAGDKLLTTPNPDVNEDMKMFEMLGLNPQKP 317          
BLAST of CB293284 vs. ExPASy Swiss-Prot
Match: BIOB_FLAJ1 (Biotin synthase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=bioB PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.789e-59
Identity = 111/193 (57.51%), Postives = 141/193 (73.06%), Query Frame = 3
Query:   45 LGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKIITTSSYDEHLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVILSAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAP 623
            L MEVCCTLGML + QA  L +AGL A+NHNLDTS EYY  +I+T  +++ L+T+++VR+  + VCSGGIIG+GE+ EDR G            ESVPINAL+AV+GTP++++KPVEIWEMIRM+AT RIVMP+  V LSAGR   S   QA+CF AGANSIF G+KLLTTPN +   D  MF+ LG+  + P
Sbjct:  126 LDMEVCCTLGMLTENQAQRLAEAGLYAYNHNLDTSEEYYKDVISTRGFEDRLQTIENVRKTNVTVCSGGIIGMGESIEDRAGMLVALSTLNPQPESVPINALVAVEGTPMEEEKPVEIWEMIRMVATTRIVMPETQVRLSAGRTNMSREGQAMCFFAGANSIFAGDKLLTTPNPDVNEDMKMFETLGMVAQKP 318          
BLAST of CB293284 vs. ExPASy Swiss-Prot
Match: BIOB_GRAFK (Biotin synthase OS=Gramella forsetii (strain KT0803) GN=bioB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.067e-58
Identity = 111/191 (58.12%), Postives = 140/191 (73.30%), Query Frame = 3
Query:   45 LGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKIITTSSYDEHLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVILSAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPK 617
            L MEVCCTLGML + QA  L +AGL A+NHNLD+S EYY ++I+T  Y + L+T+ +VR+  + VCSGGIIG+GE+E DR G            ESVPINAL+ V+GTP+++Q+PV IWEMIRM+AT RIVMP+  V LSAGR + S   QA+CF AGANSIF G+KLLTTPN +   D  MFK+LGL P+
Sbjct:  124 LDMEVCCTLGMLTENQAQRLAEAGLYAYNHNLDSSEEYYKEVISTRGYQDRLDTIGNVRKTNVTVCSGGIIGMGESEADRAGMLVALSTLNPQPESVPINALVPVEGTPMEEQEPVPIWEMIRMVATTRIVMPETQVRLSAGRTQMSREGQAMCFFAGANSIFAGDKLLTTPNPDVSEDMEMFKMLGLNPQ 314          
BLAST of CB293284 vs. ExPASy Swiss-Prot
Match: BIOB_CHLPN (Biotin synthase OS=Chlamydia pneumoniae GN=bioB PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.479e-55
Identity = 108/201 (53.73%), Postives = 140/201 (69.65%), Query Frame = 3
Query:   45 LGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKIITTSSYDEHLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVILSAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPSFHEDEAN 647
            LG EVCC LGML ++QA +L  AGL A+NHNLD+S E+Y  IITT SY++ L TL  V ++GI+ C GGI+G+GE+EEDR+             ESVP+N L  + GTPLQDQ P+  WE++R IATAR+V P++MV L+AGR   ++ +Q LCFLAGANSIF G+KLLT  NN+   D  M K+LGL P+ PSF  +  N
Sbjct:  125 LGAEVCCALGMLSEEQAKKLYDAGLYAYNHNLDSSPEFYETIITTRSYEDRLNTLDVVNKSGISTCCGGIVGMGESEEDRIKLLHVLATRDHIPESVPVNLLWPIDGTPLQDQPPISFWEVLRTIATARVVFPRSMVRLAAGRAFLTVEQQTLCFLAGANSIFYGDKLLTVENNDIDEDAEMIKLLGLIPR-PSFGIERGN 324          
BLAST of CB293284 vs. ExPASy Swiss-Prot
Match: BIOB_GLOVI (Biotin synthase OS=Gloeobacter violaceus GN=bioB PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.221e-54
Identity = 108/192 (56.25%), Postives = 135/192 (70.31%), Query Frame = 3
Query:   42 ALGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKIITTSSYDEHLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVILSAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPK 617
            AL MEVCCTLGM++  QA  LK+AGLTA+NHNLDT   YYP+++TT +Y + LET++ V  AGI+VC GGI+G+GE+  DR              ES+PIN L+ V GTPL D  PVE  +++RM+AT RI+ P AMV LSAGR++ S   QALCFLAGANSIFTG KLLTTPN     DQ + + LG+ PK
Sbjct:  124 ALDMEVCCTLGMVKPHQAERLKQAGLTAYNHNLDTGPGYYPQVVTTRTYKDRLETIRAVGAAGISVCCGGILGMGESLTDRFELLESLGSLDPTPESIPINCLVPVAGTPLADSSPVEPLDLVRMVATTRILFPDAMVRLSAGRLQMSEELQALCFLAGANSIFTGPKLLTTPNPEHSHDQKLLEKLGMEPK 315          
BLAST of CB293284 vs. ExPASy Swiss-Prot
Match: BIOB_ACIBY (Biotin synthase OS=Acinetobacter baumannii (strain AYE) GN=bioB PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.594e-54
Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 3
Query:   36 MRALGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKIITTSSYDEHLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVILSAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAP 623
            ++ALGME C TLGML + QA  LK AGL  +NHNLDTSREYY  II+T ++D+ L TL +VR+AG+ VCSGGI+GLGE+ EDR+G            ESVPIN L+ ++GTPL D + +++ E IR IA ARI+MP + + LSAGR   S  +QAL F+AGANS+F+G+KLLTTPN     DQ +F  LGLT + P
Sbjct:  120 VKALGMETCMTLGMLNQSQAERLKDAGLDYYNHNLDTSREYYSHIISTRTFDDRLNTLDYVRQAGMKVCSGGIVGLGESREDRIGLLHELATLPIHPESVPINMLVPIEGTPLADVEKLDVIEWIRTIAVARIIMPHSYIRLSAGRESLSDSDQALAFMAGANSLFSGDKLLTTPNAGEGKDQALFNKLGLTAEKP 315          
BLAST of CB293284 vs. ExPASy Swiss-Prot
Match: BIOB_ACIBT (Biotin synthase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=bioB PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.594e-54
Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 3
Query:   36 MRALGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKIITTSSYDEHLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVILSAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAP 623
            ++ALGME C TLGML + QA  LK AGL  +NHNLDTSREYY  II+T ++D+ L TL +VR+AG+ VCSGGI+GLGE+ EDR+G            ESVPIN L+ ++GTPL D + +++ E IR IA ARI+MP + + LSAGR   S  +QAL F+AGANS+F+G+KLLTTPN     DQ +F  LGLT + P
Sbjct:  120 VKALGMETCMTLGMLNQSQAERLKDAGLDYYNHNLDTSREYYSHIISTRTFDDRLNTLDYVRQAGMKVCSGGIVGLGESREDRIGLLHELATLPIHPESVPINMLVPIEGTPLADVEKLDVIEWIRTIAVARIIMPHSYIRLSAGRESLSDSDQALAFMAGANSLFSGDKLLTTPNAGEGKDQALFNKLGLTAEKP 315          
BLAST of CB293284 vs. ExPASy Swiss-Prot
Match: BIOB_ACIBC (Biotin synthase OS=Acinetobacter baumannii (strain ACICU) GN=bioB PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.594e-54
Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 3
Query:   36 MRALGMEVCCTLGMLEKQQAIELKKAGLTAHNHNLDTSREYYPKIITTSSYDEHLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVILSAGRIRSSMPEQALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAP 623
            ++ALGME C TLGML + QA  LK AGL  +NHNLDTSREYY  II+T ++D+ L TL +VR+AG+ VCSGGI+GLGE+ EDR+G            ESVPIN L+ ++GTPL D + +++ E IR IA ARI+MP + + LSAGR   S  +QAL F+AGANS+F+G+KLLTTPN     DQ +F  LGLT + P
Sbjct:  120 VKALGMETCMTLGMLNQSQAERLKDAGLDYYNHNLDTSREYYSHIISTRTFDDRLNTLDYVRQAGMKVCSGGIVGLGESREDRIGLLHELATLPIHPESVPINMLVPIEGTPLADVEKLDVIEWIRTIAVARIIMPHSYIRLSAGRESLSDSDQALAFMAGANSLFSGDKLLTTPNAGEGKDQALFNKLGLTAEKP 315          
The following BLAST results are available for this feature:
BLAST of CB293284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIOB_ARATH1.631e-9177.06Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE... [more]
BIOB_CYTH39.011e-6661.32Biotin synthase OS=Cytophaga hutchinsonii (strain ... [more]
BIOB_FLAPJ3.667e-5956.48Biotin synthase OS=Flavobacterium psychrophilum (s... [more]
BIOB_FLAJ14.789e-5957.51Biotin synthase OS=Flavobacterium johnsoniae (stra... [more]
BIOB_GRAFK1.067e-5858.12Biotin synthase OS=Gramella forsetii (strain KT080... [more]
BIOB_CHLPN5.479e-5553.73Biotin synthase OS=Chlamydia pneumoniae GN=bioB PE... [more]
BIOB_GLOVI1.221e-5456.25Biotin synthase OS=Gloeobacter violaceus GN=bioB P... [more]
BIOB_ACIBY1.594e-5455.10Biotin synthase OS=Acinetobacter baumannii (strain... [more]
BIOB_ACIBT1.594e-5455.10Biotin synthase OS=Acinetobacter baumannii (strain... [more]
BIOB_ACIBC1.594e-5455.10Biotin synthase OS=Acinetobacter baumannii (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dd11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dd11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293284 ID=CB293284; Name=CB293284; organism=Citrus sinensis; type=EST; length=813bp
GCCCTATGGGTGAGCTGGGTTTTAATCTGTCATGTATGAGGGCCTTGGGA
ATGGAGGTTTGCTGCACCTTGGGCATGCTGGAGAAGCAGCAGGCTATAGA
ACTCAAGAAAGCAGGCCTTACAGCGCACAACCATAACCTTGATACCTCAA
GAGAATATTACCCCAAAATCATTACTACAAGTAGTTATGATGAACATTTG
GAAACCCTTAAGCATGTCCGTGAAGCTGGGATTAATGTCTGTTCAGGTGG
TATAATAGGGCTTGGAGAAGCAGAGGAGGACAGAGTTGGTTTGTTGCATA
CACTAGCAACACTCCCTACTCATCCAGAGAGTGTTCCCATCAATGCGCTG
CTTGCAGTGAAAGGCACCCCTCTTCAAGATCAGAAGCCAGTTGAAATATG
GGAGATGATTCGGATGATTGCTACAGCACGTATAGTCATGCCAAAAGCAA
TGGTCATATTATCAGCTGGAAGAATTCGTTCTTCCATGCCAGAGCAGGCA
CTGTGTTTTCTTGCCGGTGCTAATTCCATCTTTACTGGCGAGAAACTTTT
GACAACTCCGAACAACAATTTCGTTGCTGATCAACTCATGTTCAAGGTTC
TTGGACTCACTCCTAAAGCTCCCAGTTTTCATGAAGACGAAGCAAATGTT
TCCAAAGCAGAGAGTTGTCAGGAAGCTGTTTCCTCTTCAGGTTGAGACTT
TACCATTTGCACGGTGGTGCCTACTTCCAAGGTATTATTTGTGTTATTGC
CCTGTTTATTACATTCAGACTCCATGCTAATGCATTGGCATTTGTTATGA
TTGCTGGAGTTCA
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