CB293301

Overview
NameCB293301
Unique NameCB293301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293301 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.998e-19
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = -3
Query:    3 MLLISRFFGNRSSSVFDPFSLGVWDPFREFPFPFG*SSAVLFQFPPETFFVVNARVVWKETPETHGFKADFPGLRXXXXXXXXVDD 260
            M LI  FFG R ++VFDPFSL VWDPF++FPFP   SSA   +F  E    V+ RV WKETPE H FKAD PGL+         DD
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDD 86          
BLAST of CB293301 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.691e-18
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = -3
Query:    3 MLLISRFFGNRSSSVFDPFSLGVWDPFREFPFPFG*SSAVLFQFPPETFFVVNARVVWKETPETHGFKADFPGLRXXXXXXXXVDD 260
            M LI  FFG R S+VFDPFSL VWDPF++FPF    +SA+   FP E    V+ RV WKETPE H FKAD PG++         DD
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFN---NSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDD 83          
BLAST of CB293301 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.166e-17
Identity = 44/75 (58.67%), Postives = 49/75 (65.33%), Query Frame = -3
Query:   36 MLLISRFFGNRSSSVFDPFSLGVWDPFREFPFPFG*SSAVLFQFPPETFFVVNARVVWKETPETHGFKADFPGLR 260
            M LI  FFG R SSVFDPFSL VWDPF++FPFP   S+        E    V+ RV WKETPE H FKAD PGL+
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSA--------ENSAFVSTRVDWKETPEAHVFKADIPGLK 67          
BLAST of CB293301 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.583e-16
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = -3
Query:    3 MLLISRFFGNRSSSVFDPFSLGVWDPFREFPFPFG*SSAVLFQFPPETFFVVNARVVWKETPETHGFKADFPGLRXXXXXXXXVDD 260
            M LI  FF  R S+VFDPFSL VWDP ++FPF    +S+    FP E    V+ RV WKETPE H FKAD PGL+         DD
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFS---NSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDD 83          
BLAST of CB293301 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.015e-16
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = -3
Query:   36 MLLISRFFGNRSSSVFDPFSLGVWDPFREFPFPFG*SSAVLFQFPPETFFVVNARVVWKETPETHGFKADFPGLR 260
            M +I  FFG R S+VFDPFSL VWDPF++FP     +S    +F  ET   VN  + WKETP+ H FKAD PGL+
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSAS----EFGKETAAFVNTHIDWKETPQAHVFKADLPGLK 71          
BLAST of CB293301 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.856e-16
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = -3
Query:    3 MLLISRFFGN--RSSSVFDPFSLGVWDPFREFPFPFG*SSAVLFQFPPETFFVVNARVVWKETPETHGFKADFPGLRXXXXXXXXVDD 260
            M LI  FFGN  RS+S+FDPFSL VWDPF+E  FP   S         ET  + NARV WKET E H FKAD PG++         DD
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSG--------ETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDD 80          
BLAST of CB293301 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.750e-15
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = -3
Query:    3 MLLISRFFGNRSSSVFDPFSLGVWDPFREFPFPFG*SSAVLFQFPPETFFVVNARVVWKETPETHGFKADFPGLRXXXXXXXXVDD 260
            M LI   FG R S+VFDPFSL VWDPF++F FP   S+        E    VN RV WKETPE H F+AD PGL+         DD
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSA--------ENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDD 78          
BLAST of CB293301 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.092e-15
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = -3
Query:    3 MLLISRFFGNRSSSVFDPFSLGVWDPFREFPFPFG*SSAVLFQFPPETFFVVNARVVWKETPETHGFKADFPGLRXXXXXXXXVDD 260
            M LI  FFG R S+VFDPFSL +WDPF++F  P    SA       E    V+ RV WKETPE H FKAD PGL+         DD
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVSA-------ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDD 79          
BLAST of CB293301 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.527e-14
Identity = 42/89 (47.19%), Postives = 50/89 (56.18%), Query Frame = -3
Query:    3 MLLISRFFGNR---SSSVFDPFSLGVWDPFREFPFPFG*SSAVLFQFPPETFFVVNARVVWKETPETHGFKADFPGLRXXXXXXXXVDD 260
            M LI  FFGN    ++++FDPFSL VWDPF+E  FP   SSA           + NARV WKET E H FKAD PG++         DD
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSA-----------IANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDD 78          
BLAST of CB293301 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.301e-14
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = -3
Query:   36 MLLISRFFGNRSSSVFDPFSLGVWDPFREFPFPFG*SSAVLFQFPPETFFVVNARVVWKETPETHGFKADFPGLR 260
            M +I  FFG+R S+V +PFSL +WDPF+++P     SS    +F  ET    N  + WKETP+ H FKAD PGL+
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLIT--SSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLK 73          
The following BLAST results are available for this feature:
BLAST of CB293301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
HSP16_SOYBN1.998e-1954.6518.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA1.691e-1853.4918.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_SOYBN4.166e-1758.6717.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA1.583e-1651.1618.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_DAUCA6.015e-1653.3317.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS178_ARATH7.856e-1651.1417.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP13_SOYBN1.750e-1550.0017.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN5.092e-1550.0017.5 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ARATH2.527e-1447.1917.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP12_DAUCA3.301e-1448.0018.0 kDa class I heat shock protein OS=Daucus caro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05de11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05de11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293301 ID=CB293301; Name=CB293301; organism=Citrus sinensis; type=EST; length=262bp
CTGTCGTCCACAACCTCGACCTTCACTTCCTCTTTCCTCAGCCCAGGAAA
ATCGGCCTTGAACCCGTGGGTTTCGGGGGTTTCCTTCCAAACCACGCGGG
CGTTAACAACAAAAAAGGTTTCTGGAGGGAACTGAAACAACACCGCAGAC
GATTAACCAAACGGGAAAGGGAACTCCCTGAATGGATCCCAAACGCCGAG
CGAAAATGGATCGAACACACTGCTGCTACGGTTGCCGAAAAACCTTGAAA
TTAACAACATTT
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