CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2460 contig Csv1_Contig2460:1138..1887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: MFP_ORYSJ (Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 2.874e-92
Identity = 167/244 (68.44%), Postives = 192/244 (78.69%), Query Frame = 1
Query:   16 GIKTIEANVP*LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKP 747
            G K I AN+  LV RG LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATNTSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+T             NCTGFAVNR FFPY+Q + LLVS+G+DVFRID  I SFG+P+GPFQL DLAGYGVA A    +  AF  R+  S LVDL++++GR GK+NGKG Y YEKG KP
Sbjct:  348 GQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLYEKGGKP 591          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: MFPA_CUCSA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.000e-77
Identity = 140/243 (57.61%), Postives = 182/243 (74.90%), Query Frame = 1
Query:   16 GIKTIEANVP*LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            GI  + AN+   V +G +T +K   ++ +LKGVL+Y  FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LATNTSTIDL ++GE+  S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+              NCTGFAVNR FFPYSQ+A LL   GVD ++ID AI  FG+P+GPF+L DL G+GVAAAT+ +F +AFP+R+++S L+ L+ +    G++  KG Y Y+K  K
Sbjct:  351 GIDRVRANLQSRVKKGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLATNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIKKTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFRLCDLVGFGVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGFYVYDKNRK 593          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: MFPA_BRANA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.584e-74
Identity = 136/243 (55.97%), Postives = 178/243 (73.25%), Query Frame = 1
Query:   16 GIKTIEANVP*LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            GI  ++AN+   V +GK++++K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTSTIDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT  TSAQVI+DL+              NCTGFAVNR FFPY+Q+A  LV  G D + ID A+  FG+P+GPF+L DL G+GVA AT+ +F + FP+R+++S ++ L+ +  R G+A  KG Y Y+   K
Sbjct:  351 GIGRVKANLQSRVKKGKMSKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFRLCDLVGFGVAIATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGFYLYDDRRK 593          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSE14 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.146e-40
Identity = 85/231 (36.80%), Postives = 128/231 (55.41%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            +G+LT  K   AL  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E     H ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S + +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +  +VD L ++ R G+ NGKG Y YE   K
Sbjct:  367 KGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVEANVGEHTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEEAVATTVAYARKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSVVDALYEAKRLGQKNGKGFYAYETDKK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEP1 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.955e-40
Identity = 89/236 (37.71%), Postives = 128/236 (54.24%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI +N++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   VD L +S R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVEGQVKDDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDVAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYESNRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEOL (Fatty acid oxidation complex subunit alpha OS=Pseudomonas oleovorans GN=fadB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.553e-40
Identity = 88/236 (37.29%), Postives = 128/236 (54.24%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI +N++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   VD L ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVETQVKDDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEVAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYEANRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEPW (Fatty acid oxidation complex subunit alpha OS=Pseudomonas putida (strain W619) GN=fadB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.334e-40
Identity = 88/236 (37.29%), Postives = 128/236 (54.24%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI +N++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   VD L ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVEGQVKEDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEVAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYEANRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEPU (Fatty acid oxidation complex subunit alpha OS=Pseudomonas putida GN=fadB PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.334e-40
Identity = 88/236 (37.29%), Postives = 128/236 (54.24%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI +N++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   VD L ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VDKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVEGQVKEDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEVAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYEANRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEPG (Fatty acid oxidation complex subunit alpha OS=Pseudomonas putida (strain GB-1) GN=fadB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.334e-40
Identity = 88/236 (37.29%), Postives = 128/236 (54.24%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI +N++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   VD L ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVEGQVKDDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEVAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYEANRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEPK (Fatty acid oxidation complex subunit alpha OS=Pseudomonas putida (strain KT2440) GN=fadB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.355e-40
Identity = 88/236 (37.29%), Postives = 128/236 (54.24%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI +N++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   VD L ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVEGQVKDDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDVAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYEANRLGQKNGKGFYAYETDKRGKP 600          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
MFP_ORYSJ2.874e-9268.44Peroxisomal fatty acid beta-oxidation multifunctio... [more]
MFPA_CUCSA2.000e-7757.61Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
MFPA_BRANA1.584e-7455.97Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
FADB_PSE141.146e-4036.80Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEP11.955e-4037.71Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEOL2.553e-4037.29Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEPW3.334e-4037.29Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEPU3.334e-4037.29Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEPG3.334e-4037.29Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEPK4.355e-4037.29Fatty acid oxidation complex subunit alpha OS=Pseu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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