CB293327

Overview
NameCB293327
Unique NameCB293327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7528 contig Csv1_Contig7528:100..355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.673e-15
Identity = 38/56 (67.86%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   88 SYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            S+S KDY DPPPEPLFDA EL KWSFY+ALIAEFIA            IGYKSQTD
Sbjct:   11 SFSGKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVIGYKSQTD 66          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.636e-14
Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   85 GSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            G +SAKDYTDPPP PL DA ELTKWS Y+A+IAEFIA            IGYK QTD
Sbjct:   14 GEFSAKDYTDPPPAPLIDADELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTD 70          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.147e-13
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   85 GSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            G +SAKDYTDPPP PL DA ELT+WS Y+A+IAEFIA            IGYK QTD
Sbjct:   13 GEFSAKDYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTD 69          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.246e-13
Identity = 34/57 (59.65%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   85 GSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            G +SAKDYTDPPP PL D  ELTKWS Y+A+IAEFIA            IGYK Q+D
Sbjct:   13 GEFSAKDYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSD 69          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.065e-12
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   85 GSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            G Y AKDY+DPPP PL DA ELTKWS Y+A+IAEF+A            IGYK Q+D
Sbjct:   14 GEYMAKDYSDPPPAPLIDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQSD 70          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.373e-12
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   85 GSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            G ++AKDYTDPPP PL DA EL  WS Y+A+IAEFIA            IGYK QTD
Sbjct:   14 GEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTD 70          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.373e-12
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   85 GSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            G ++AKDYTDPPP PL DA EL  WS Y+A+IAEFIA            IGYK QTD
Sbjct:   14 GEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTD 70          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.100e-12
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   85 GSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            G ++AKDYTDPPP PL DA EL  WS Y+A+IAEFIA            IGYK QTD
Sbjct:   14 GEFAAKDYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTD 70          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.049e-12
Identity = 34/57 (59.65%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   85 GSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            G YSAKDY DPPP PL D  ELTKWS Y+A IAEFIA            IGYK Q+D
Sbjct:   12 GEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSD 68          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.538e-11
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   88 SYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            ++  KDY+DPPP PL DA ELTKWS Y+A+IAEF+A            IGYK QTD
Sbjct:   10 AHEGKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTD 65          
The following BLAST results are available for this feature:
BLAST of CB293327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PIP25_ARATH6.673e-1567.86Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP23_MAIZE9.636e-1463.16Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP24_MAIZE2.147e-1361.40Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP22_ORYSJ6.246e-1359.65Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP23_ORYSJ1.065e-1257.89Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP21_ORYSJ2.373e-1257.89Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE2.373e-1257.89Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_MAIZE3.100e-1257.89Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP27_MAIZE4.049e-1259.65Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP25_MAIZE1.538e-1155.36Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dg05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293327 ID=CB293327; Name=CB293327; organism=Citrus sinensis; type=EST; length=256bp
GCAAAGATCTCCTTTTAAGCTGTTTCTCTCCAAATCATTGTTACTGGTTT
TCCAAAGGCGAAAGACACTGGGGTGGTATAACCCGGCTCATATTCAGCCA
AGGACTACACGGACCCACCGCCGGAGCCGCTATTCGACGCCGTGGAGCTG
ACCAAATGGTCATTCTACAAAGCCTTGATAGCTGAGTTCATAGCAACCCT
GCTCTTTCTTTACGTCACTGTCTTGACTGTCATTGGCTACAAAAGCCAGA
CCGATC
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