CB293329

Overview
NameCB293329
Unique NameCB293329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig127 contig Csv1_Contig127:1065..1884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293329 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 112.464 bits (280), Expect = 2.989e-24
Identity = 66/211 (31.28%), Postives = 109/211 (51.66%), Query Frame = 1
Query:   13 FFLSWYSSQFLSHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDDLPVEEEVTESVHTNANMNIQV 618
            FFL+WYS++ + HG+ +L  A+  F    V+I  K+  IH WY   SH +ELTAGFYN A RDGY  +A M A++   +    +++ D  QP E+ S+P+ L+ Q+ ++  K  ++V+G+N+        + QM  N+    V         +   TY R+       ++F  F KFV+     ++H D  P    ++ +V   +N  I +
Sbjct:  264 FFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVK-----KMHADLDPSPNAISPAVLERSNSAITI 469          
BLAST of CB293329 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.363e-23
Identity = 62/211 (29.38%), Postives = 107/211 (50.71%), Query Frame = 1
Query:   13 FFLSWYSSQFLSHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLN-QLELHGDDLPVEEEVTESVHTNANMNIQ 615
            FF++WYS++ + HG+ +L  A+  F    V++  K+  IH  Y   SH +ELTAG+YN  KRDGY  +A M +K+   +    +++ D     E+ S+P+ L+ ++ +   K G+EV+G+N+  T    G+ Q+  N     V         +  FTY R+    F   +F  F K VR ++   +  GD      E+     +N+ + ++
Sbjct:  264 FFMTWYSNKLIFHGDQILGEANKIFAGLKVNLAAKVSGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTDNTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNARPNGVNPNGKPKLRMYGFTYLRLSDTVFQENNFELFKKLVRKMHADQDYCGDAAKYGHEIVPLKTSNSQLTLE 474          
BLAST of CB293329 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.040e-21
Identity = 58/190 (30.53%), Postives = 100/190 (52.63%), Query Frame = 1
Query:   13 FFLSWYSSQFLSHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGDD 555
            FFL+WYS+Q L+HG+ +L  A+  F    V +  K+  IH WYK ++H +ELTAG+YN   RDGY  +A+M +++   +    +++ D  Q  ++ S+P+ L+ Q+ +   +  +EV+G+N+        + Q+  N   + V         +   TY R+        +F  F KFV  ++  + H DD
Sbjct:  262 FFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSDAQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLLQESNFEIFKKFVVKMHADQSHCDD 451          
BLAST of CB293329 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.176e-20
Identity = 57/189 (30.16%), Postives = 99/189 (52.38%), Query Frame = 1
Query:   13 FFLSWYSSQFLSHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 552
            FFL+WYS+Q L+HG+ +L  A+  F    V++  K+  IH WYK ++H +ELTAG+YN   RDGY  +A+M +++   +    +++ D  Q  ++ S P+ L+ Q+ +   +  +EV+G+N+        + Q+  N   + V         +   TY R+        +F  F KFV     +++H D
Sbjct:  262 FFLTWYSNQLLNHGDEILDEANKAFLGCKVNLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSDAQSGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGVTYLRLSDELLQQSNFDIFKKFV-----VKMHAD 445          
BLAST of CB293329 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.176e-20
Identity = 58/189 (30.69%), Postives = 98/189 (51.85%), Query Frame = 1
Query:   13 FFLSWYSSQFLSHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV-------VDLF--TYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 552
            FFL+WYS++ L+HG+ +L  A+  F    V +  K+  IH WYK  +H +ELTAG+YN   RDGY  +A M +++   +    +++ D  QP ++ S P+ L+ Q+ +   +  + V+G+N+        + Q+  N   + V       + +F  TY R+        +F  F KFV     L++H D
Sbjct:  262 FFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFV-----LKMHAD 445          
BLAST of CB293329 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.005e-20
Identity = 60/208 (28.85%), Postives = 103/208 (49.52%), Query Frame = 1
Query:   13 FFLSWYSSQFLSHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGF---------EQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN-------------QLELHGDDLPVEE 570
            FFL+WYS++ + HG+ +L  A+  F    V +  K+  IH WY   +H +ELTAG+YN   RDGY  +A M  ++   M     ++ D  Q  E+ S+PE L+ Q+ +A  + G+ ++ +N+        +         + + KN   E+ +  FTY R+    F  +++ +F  FVR ++              LE    ++P+EE
Sbjct:  259 FFLTWYSNKLIKHGDKILDEANKVFLGCKVQLAIKVSGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSSEAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNARPQGINKNGPPEHKLHGFTYLRVSDELFQEQNYTTFKTFVRRMHANLDYNPNVDPVAPLERSKAEIPIEE 466          
BLAST of CB293329 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.467e-20
Identity = 57/189 (30.16%), Postives = 98/189 (51.85%), Query Frame = 1
Query:   13 FFLSWYSSQFLSHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHFPSFTKFVRNLNQLELHGD 552
            FFL+WYS+Q L+HG+ +L  A+  F    V +  K+  IH WYK  +H +ELTAG+YN   RDGY  +A++ +++   +    +++ D  Q  ++ SSP+ L+ Q+ +   +  +EV+G+N+        + Q+  N   + V         +   TY R+        +F  F KFV     +++H D
Sbjct:  262 FFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSDAHSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLMQQSNFDIFKKFV-----VKMHAD 445          
BLAST of CB293329 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.834e-20
Identity = 57/188 (30.32%), Postives = 93/188 (49.47%), Query Frame = 1
Query:   13 FFLSWYSSQFLSHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKN---------------LFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 531
            FFL+WYS+  + HG+ +L  A+  F    V +  KI  IH WYK  SH +ELTAG+YN   RDGY  +A M  ++   +     ++ D  Q  ++ S+PE L+ Q+ +A  + G+ V+ +N+     P  +  + +N               LFG      FTY R+       +++ +F  FV  ++
Sbjct:  259 FFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFG------FTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CB293329 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.619e-20
Identity = 56/182 (30.77%), Postives = 94/182 (51.65%), Query Frame = 1
Query:   13 FFLSWYSSQFLSHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGF---------EQMKKNLFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 531
            FFLSWYS++ + HG+ +L  A+  F    V +  KI  IH WY+  +H +ELTAG+YN   RDGY  +A M  ++   M     ++ D  Q  E+ S+PE L+ Q+ +A  + G+ V+ +N+        +         + + KN   E+ +  FTY R+       +++ +F  FV  ++
Sbjct:  259 FFLSWYSNKLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSEEAKSAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNARPKGINKNGPPEHKLFGFTYLRLSNELLEGQNYATFQTFVEKMH 440          
BLAST of CB293329 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.300e-19
Identity = 57/188 (30.32%), Postives = 93/188 (49.47%), Query Frame = 1
Query:   13 FFLSWYSSQFLSHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGFYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKN---------------LFGENVVDLFTYQRMGAYFFSPEHFPSFTKFVRNLN 531
            FFL+WYS+  + HG+ +L  A+  F    V +  KI  IH WYK  SH +ELTAG+YN   RDGY  +A M  ++   +     ++ D  Q  ++ S+PE L+ Q+ +A  + G+ V+ +N+     P  +  + +N               LFG      FTY R+       +++ +F  FV  ++
Sbjct:  259 FFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFG------FTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
The following BLAST results are available for this feature:
BLAST of CB293329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AMYB_IPOBA2.989e-2431.28Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_ARATH7.363e-2329.38Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_TRIRP4.040e-2130.53Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_VIGUN1.176e-2030.16Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_SOYBN1.176e-2030.69Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_MAIZE2.005e-2028.85Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_MEDSA4.467e-2030.16Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_HORSP5.834e-2030.32Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_WHEAT7.619e-2030.77Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_HORVU1.300e-1930.32Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05dg06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dg06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293329 ID=CB293329; Name=CB293329; organism=Citrus sinensis; type=EST; length=820bp
GCCCGTTAAGACTTTTTCCTTTCCTGGTACTCAAGTCAGTTCCTTTCTCA
TGGAAATTGCCTTCTTTCCCTTGCCTCATCAACTTTTGGCGAAACTGGAG
TGTCAATATATGGAAAAATCCCACTCATTCACTCATGGTACAAAACTCGA
TCCCATCCTTCTGAACTGACAGCTGGCTTCTATAACACAGCCAAGAGAGA
TGGCTATGCTGCGGTTGCTGAAATGTTTGCAAAGAATTCTTGCAAAATGA
TCTTGCCGGGAATGGACCTTTCAGATGAGCACCAGCCACGCGAGTCCTTC
TCAAGTCCTGAATCATTACTTGCCCAAATCAGAACAGCTTGCAATAAACA
TGGTGTCGAGGTTTCTGGGCAGAACTCATCAGTTACAGGAGCTCCTGGCG
GTTTTGAGCAAATGAAGAAAAATTTGTTTGGTGAGAATGTAGTGGACTTG
TTCACTTATCAGAGAATGGGAGCATATTTCTTTTCACCTGAGCATTTCCC
TTCTTTCACCAAGTTTGTTCGGAACCTCAATCAACTCGAATTGCATGGCG
ATGATCTACCAGTAGAGGAAGAAGTCACTGAATCTGTACATACGAATGCA
AACATGAATATCCAAGTGCAAGCTGCTTAGTAAGAGTAGGCATTTTTAAT
GGTGTAAATATGTATTTTGCCTGTCATTGTAAGAGAGAAGAATGTATTGG
ACCGAGCATACCAAAAGTAGCTTAAGGATACCTGTACTTCACATTGAAAT
TAAAACTGCTAGTATGAGCAAATTTACCCTCAAGTTTCTCTTTGTAATGC
ACGTATAATTATATATGGGC
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