CB293354

Overview
NameCB293354
Unique NameCB293354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293354_ssr667 microsatellite CB293354_ssr667:667..676. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12790 contig Csv1_Contig12790:36..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.285e-48
Identity = 94/121 (77.69%), Postives = 105/121 (86.78%), Query Frame = -2
Query:  191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553
            EPVDREKTCPLLLRVFTK GG H+ ED+AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+ AARRR+ARLSFAFVYP+  G + VREVG+  +Y  R+Q DD K L+EL FEIGDYLDVAI
Sbjct:   31 EPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151          
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = -2
Query:  191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G   S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = -2
Query:  191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G   S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = -2
Query:  191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G   S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = -2
Query:  191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553
            +P+DREKTCPLLLRVFT   G H R D   RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G   S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_DROME (Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = -2
Query:  191 VDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 547
            +DREKTCP+LLRVF   G  HS  ++   G  P +E+QIYTW+DATL ELT LV++V P  R++     FA VYP+ ++  F +RE+G   +  G++ +DD K LA+  F IGD+LD++I
Sbjct:   18 IDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIG--VTCTGQKGIDDNKTLAQAKFSIGDFLDISI 134          
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_CAEEL (Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = -2
Query:  191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVR--GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNG-RFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553
            +P+DREK CP+LLRVF      +   ++  R  G  P  E+Q++TW D +LRELT L+KEV P ARR+     FA V  D+   R+++R+VG   +  G R +DD K L +  FE+GD++DVAI
Sbjct:   16 KPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIKEVNPDARRKGTTFDFAIVQADRGSPRYILRDVGN--TTNGERGIDDNKTLQQCKFEVGDFVDVAI 137          
The following BLAST results are available for this feature:
BLAST of CB293354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SAP18_ARATH6.285e-4877.69Histone deacetylase complex subunit SAP18 OS=Arabi... [more]
SAP18_PONAB1.901e-2854.10Histone deacetylase complex subunit SAP18 OS=Pongo... [more]
SAP18_HUMAN1.901e-2854.10Histone deacetylase complex subunit SAP18 OS=Homo ... [more]
SAP18_BOVIN1.901e-2854.10Histone deacetylase complex subunit SAP18 OS=Bos t... [more]
SAP18_MOUSE2.483e-2854.10Histone deacetylase complex subunit SAP18 OS=Mus m... [more]
SAP18_DROME1.665e-2447.50Histone deacetylase complex subunit SAP18 OS=Droso... [more]
SAP18_CAEEL5.923e-2244.35Probable histone deacetylase complex subunit SAP18... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05dh09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dh09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293354 ID=CB293354; Name=CB293354; organism=Citrus sinensis; type=EST; length=683bp
CGCTATGAAAAACTATCAAGACAAAGCCAAATGGCACTGAGTGTTGATCA
TCACAAACACCTCAGGGCTGAAACAAAGAGTGGGAAATCATGCTAAAATA
TCACTAAGTGACATAACAGGCCCTTTCCCAAGTCTCAAATCTAGTCGTAT
CATAACCGATCTAAACAAATTACACAGTTAAACTTTATAGGATAGCCACA
TCCAAGTAATCTCCAATCTCAAAGCCAAGTTCAGCCAACATTTTGCCATC
ATCTAACTGCCTCCTACCTTCATAAGAGAAGGGCTTCCCCACCTCTCTCA
CCATAAAACGACCATTCTTATCGGGATAAACAAAAGCAAAAGAAAGCCTT
GCATCCCTTCTTCTTGCAGCCGGTGCTACTTCTTTAACCAGATCAGTTAG
TTCACGAAGAGTAGCATCCTTCCATGTATAAATTTGAACCTCATCCTTGG
GTTCCTTGCCTCTGACTGCAAAATCCTCCCTAGAATGGAGCCCCCCAATC
TTAGTGAAAACTCGAAGCAACAGAGGACAAGTCTTCTCGCGATCAACGGG
CTCAAAACGGGGGCGAGGAGGCGGTGGTGGAGGGCCCCTTCCAGAAGGAT
GTAATGGCCTGCTCCTGCCTGCTTGTCTTCTTTGCGCTTCTCCTACTCCC
GCCATCCCTCTCTAGTTCTCTCTCTCCCTCGTG
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