CB293354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 6.285e-48 Identity = 94/121 (77.69%), Postives = 105/121 (86.78%), Query Frame = -2 Query: 191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553 EPVDREKTCPLLLRVFTK GG H+ ED+AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+ AARRR+ARLSFAFVYP+ G + VREVG+ +Y R+Q DD K L+EL FEIGDYLDVAI Sbjct: 31 EPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28 Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = -2 Query: 191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553 +P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G S GR+ DD L F+IGDYLD+AI Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28 Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = -2 Query: 191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553 +P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G S GR+ DD L F+IGDYLD+AI Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28 Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = -2 Query: 191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553 +P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G S GR+ DD L F+IGDYLD+AI Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28 Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = -2 Query: 191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553 +P+DREKTCPLLLRVFT G H R D RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G S GR+ DD L F+IGDYLD+AI Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_DROME (Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24 Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = -2 Query: 191 VDREKTCPLLLRVFTKIGGLHSREDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 547 +DREKTCP+LLRVF G HS ++ G P +E+QIYTW+DATL ELT LV++V P R++ FA VYP+ ++ F +RE+G + G++ +DD K LA+ F IGD+LD++I Sbjct: 18 IDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIG--VTCTGQKGIDDNKTLAQAKFSIGDFLDISI 134
BLAST of CB293354 vs. ExPASy Swiss-Prot
Match: SAP18_CAEEL (Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22 Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = -2 Query: 191 EPVDREKTCPLLLRVFTKIGGLHSREDFAVR--GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNG-RFMVREVGKPFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 553 +P+DREK CP+LLRVF + ++ R G P E+Q++TW D +LRELT L+KEV P ARR+ FA V D+ R+++R+VG + G R +DD K L + FE+GD++DVAI Sbjct: 16 KPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIKEVNPDARRKGTTFDFAIVQADRGSPRYILRDVGN--TTNGERGIDDNKTLQQCKFEVGDFVDVAI 137 The following BLAST results are available for this feature:
BLAST of CB293354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB293354 ID=CB293354; Name=CB293354; organism=Citrus sinensis; type=EST; length=683bpback to top |