CB293388

Overview
NameCB293388
Unique NameCB293388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB293388 vs. ExPASy Swiss-Prot
Match: Y1301_ARATH (Uncharacterized membrane protein At1g63010 OS=Arabidopsis thaliana GN=At1g63010 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.547e-58
Identity = 111/162 (68.52%), Postives = 131/162 (80.86%), Query Frame = -1 
Query:  133 YYFGWSTGAVAIFLACFGLPVFPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFQVFIPYSVPQYVCSGLVLFVFAEVLEGVNLSLLFGGMFSRLSRGTYNGGLLSPEAGPIARVIAEGPITLAGFLGQSNFLNVPLLPSLFVWGASIIATLVPYNSFY 618
            YYF W+T +VAIFLAC GL V P+NI+VGSYISNMFEDRQILL SEI+V +GILFSF +F+PY+VPQYV SGL++FV AEVLEGVNLSLL   M SRLS+GTYNGGLLS EAG +ARV+A+  ITL G+LG+ + LN  LLPSL +   SI+AT   YNS Y
Sbjct:  536 YYFSWTTSSVAIFLACLGLTVLPINILVGSYISNMFEDRQILLTSEIIVFLGILFSFNLFVPYTVPQYVISGLIMFVAAEVLEGVNLSLLSRVMSSRLSKGTYNGGLLSTEAGTLARVVADATITLGGYLGRGHLLNATLLPSLVICIGSIVATCCTYNSLY 697
The following BLAST results are available for this feature:
BLAST of CB293388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1301_ARATH5.547e-5868.52Uncharacterized membrane protein At1g63010 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293388 ID=CB293388; Name=CB293388; organism=Citrus sinensis; type=EST; length=618bp
TACTTAGGATTCAACCCTTAAGAGAGAGGGAAAATCCACTTCACGGGAAT
ACAGGGGAATAGCATGAAAAGCATTCCGGATTTGGGAATACCCAAATTTT
AGGCCCTTAATAGTGGAACCCTTGATAAATCAATAAAAAGAGTTGTAGGG
AACCAAAGTAGCGATAATGGAAGCTCCCCAAACAAACAGGGAAGGGAGTA
AAGGGACATTCAAGAAATTGCTCTGGCCCAAAAACCCAGCCAGAGTAATT
GGGCCCTCCGCGATGACCCGAGCAATTGGCCCAGCTTCTGGTGAAAGTAA
CCCCCCATTGTACGTTCCGCGAGAAAGCCTGGAAAACATCCCCCCAAATA
GTAGTGACAAGTTGACCCCTTCAAGTACTTCAGCAAAAACAAACAAGACG
AGTCCTGAGCAAACATATTGTGGAACGGAGTAGGGGATGAACACCTGGAA
GCTAAAGAGTATGCCTATACAGACCATGATTTCAGAAGCCAATAAAATTT
GCCTATCTTCGAACATGTTGCTAATATAGCTGCCAACAATGATGTTTACT
GGAAAAACGGGAAGGCCAAAACATGCAAGAAAAATTGCGACCGCGCCCGT
GGACCATCCAAAATAGTA
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