CB293389

Overview
NameCB293389
Unique NameCB293389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig303 contig Csv1_Contig303:1..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB293389 vs. ExPASy Swiss-Prot
Match: Y1301_ARATH (Uncharacterized membrane protein At1g63010 OS=Arabidopsis thaliana GN=At1g63010 PE=1 SV=1)

HSP 1 Score: 416.772 bits (1070), Expect = 7.659e-116
Identity = 208/280 (74.29%), Postives = 243/280 (86.79%), Query Frame = 3 
Query:    9 YDFSSIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIE--ENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVLIPYSVPQYVCSGLV 842
            YD +SIA+LL+GR+ CG GSARAVNRRYISDCVPL+IRMQASAGFVSASALGMACGPALAGLLQ  FK YK TFNQ+TLPGW+MAVAWLFYLVWLCISF+EP RD E  E + + E+ ++ V++S +E+GL+ PLLITS  KPEDE+   E D S+E+ E+SH PANS   AYRLLTPSVKVQLLIYFMLKY MEILLSESSV+T+YYF W+T +VAIFLACLGLTVLP+NI+VGSYISNMFEDRQILL SEI+V +GILFSF++ +PY+VPQYV SGL+
Sbjct:  333 YDANSIALLLLGRVCCGLGSARAVNRRYISDCVPLRIRMQASAGFVSASALGMACGPALAGLLQIKFKFYKFTFNQSTLPGWVMAVAWLFYLVWLCISFREPLRDTEDGEKNNRNETTSDRVESSRVEEGLRLPLLITSGIKPEDEE---ECDESEESPEDSHKPANSFIEAYRLLTPSVKVQLLIYFMLKYSMEILLSESSVITSYYFSWTTSSVAIFLACLGLTVLPINILVGSYISNMFEDRQILLTSEIIVFLGILFSFNLFVPYTVPQYVISGLI 609
The following BLAST results are available for this feature:
BLAST of CB293389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1301_ARATH7.659e-11674.29Uncharacterized membrane protein At1g63010 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293389 ID=CB293389; Name=CB293389; organism=Citrus sinensis; type=EST; length=843bp
GCACCTGGTATGATTTCAGTTCCATAGCAGTTCTCTTAATTGGCCGTCTT
TTCTGTGGATTCGGTTCAGCTAGAGCTGTTAACCGGCGTTATATCAGTGA
TTGTGTACCACTAAAAATCCGCATGCAGGCATCGGCAGGTTTTGTTAGCG
CCAGTGCTCTAGGAATGGCTTGTGGTCCTGCTCTTGCTGGCTTGCTTCAA
ACAAATTTTAAAATCTACAAGTTGACGTTTAATCAAAACACGTTACCTGG
TTGGATTATGGCTGTTGCCTGGCTTTTTTATTTGGTATGGTTGTGTATCT
CATTTAAAGAACCTTCTCGGGATATTGAAGAGAATCATACACAGGAAGAA
TCGAATGCTGAACCAGTAGATAATAGTGCACTGGAAAAAGGTCTTCAGCA
ACCATTGCTCATAACTTCAGAAGAAAAACCAGAAGATGAAGATGGTGACC
AAGAATATGACGGAAGTGATGAAACTTCTGAGGAATCTCATCCACCAGCC
AATTCAATTAGATCAGCATACAGACTACTTACGCCCTCTGTAAAGGTTCA
ATTGTTGATATATTTTATGCTCAAGTACGTGATGGAGATTTTACTCTCTG
AATCTAGCGTTGTTACTACATACTATTTTGGATGGTCCACGGGCGCGGTC
GCAATTTTTCTTGCATGTCTTGGCCTTACCGTTCTTCCAGTAAACATCAT
TGTTGGCAGCTATATTAGCAACATGTTCGAAGATAGGCAAATTTTATTGG
CTTCTGAAATCATGGTCTGTATAGGCATACTCTTTAGCTTCCATGTGCTC
ATCCCCTACTCCGTTCCACAATATGTCTGCTCAGGACTCGTCT
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