CB293433

Overview
NameCB293433
Unique NameCB293433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293433_ssr456 microsatellite CB293433_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB293433 vs. ExPASy Swiss-Prot
Match: MPCP_CHOFU (Phosphate carrier protein, mitochondrial OS=Choristoneura fumiferana PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.013e-26
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  511 IYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFV 801
            +YKH VP P+ +CSK  QL ++FA GY+AGVFCAIVSHPAD +VS LN  K ATVG  V KLG  G++ +GL  RI+MIGTLT  QW IYDA KV++
Sbjct:  230 LYKHVVPKPRAECSKGEQLVVTFAAGYIAGVFCAIVSHPADTVVSKLNQDKTATVGSIVGKLGFAGVW-KGLGPRIIMIGTLTALQWFIYDAVKVWL 325          
BLAST of CB293433 vs. ExPASy Swiss-Prot
Match: MPCP_BOVIN (Phosphate carrier protein, mitochondrial OS=Bos taurus GN=SLC25A3 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.168e-25
Identity = 55/99 (55.56%), Postives = 74/99 (74.75%), Query Frame = -3
Query:  505 IYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 801
            +YK  VP P+ +CSKP QL ++F  GY+AGVFCAIVSHPAD++VS LN  KG++  + +K+LG  G++ +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  245 LYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASEVLKRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 342          
BLAST of CB293433 vs. ExPASy Swiss-Prot
Match: MPCP_PONAB (Phosphate carrier protein, mitochondrial OS=Pongo abelii GN=SLC25A3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.795e-25
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = -3
Query:  505 IYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 801
            +YK  VP P+ +CSKP QL ++F  GY+AGVFCAIVSHPAD++VS LN  KG++    +K+LG  G++ +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  244 LYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASLVLKRLGFKGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 341          
BLAST of CB293433 vs. ExPASy Swiss-Prot
Match: MPCP_HUMAN (Phosphate carrier protein, mitochondrial OS=Homo sapiens GN=SLC25A3 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.795e-25
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = -3
Query:  505 IYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 801
            +YK  VP P+ +CSKP QL ++F  GY+AGVFCAIVSHPAD++VS LN  KG++    +K+LG  G++ +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  245 LYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASLVLKRLGFKGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 342          
BLAST of CB293433 vs. ExPASy Swiss-Prot
Match: MPCP_RAT (Phosphate carrier protein, mitochondrial OS=Rattus norvegicus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.756e-24
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = -3
Query:  505 IYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 801
            +YK  VP P+ +C+K  QL ++F  GY+AGVFCAIVSHPAD++VS LN  KG+T    +++LG  G++ +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  239 LYKFVVPKPRSECTKAEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSTASQVLQRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 336          
BLAST of CB293433 vs. ExPASy Swiss-Prot
Match: MPCP_MOUSE (Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.756e-24
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = -3
Query:  505 IYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 801
            +YK  VP P+ +C+K  QL ++F  GY+AGVFCAIVSHPAD++VS LN  KG+T    +++LG  G++ +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  240 LYKFVVPKPRSECTKAEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSTASQVLQRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 337          
BLAST of CB293433 vs. ExPASy Swiss-Prot
Match: MPCP_CAEEL (Phosphate carrier protein, mitochondrial OS=Caenorhabditis elegans GN=F01G4.6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.093e-23
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = -3
Query:  505 IYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 801
            +Y++ VP P+ +CSK  QL ++F  GY+AGVFCAIVSHPAD +VS LN    AT G  +KKLG  G++ +GL  RI+MIGTLT  QW IYD+ KV + L
Sbjct:  223 LYQYVVPKPRAECSKAEQLVVTFVAGYIAGVFCAIVSHPADTVVSKLNQDSQATAGGILKKLGFAGVW-KGLVPRIIMIGTLTALQWFIYDSVKVALNL 320          
BLAST of CB293433 vs. ExPASy Swiss-Prot
Match: MPCP_SCHPO (Probable mitochondrial phosphate carrier protein OS=Schizosaccharomyces pombe GN=SPBC1703.13c PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.887e-21
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = -3
Query:  508 PKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAK------GATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVG 777
            PK+  SK  ++GISFAGGY+AGV CAI+SHPAD +VS LN+ K      GA      K++G  GL+  GL +RIVMIGTLTGAQW IYD+FK+  G
Sbjct:  211 PKNMYSKAEKIGISFAGGYMAGVLCAIISHPADVMVSKLNSNKKAGEGAGAAAARIYKEIGFSGLW-NGLGVRIVMIGTLTGAQWLIYDSFKIMCG 305          
BLAST of CB293433 vs. ExPASy Swiss-Prot
Match: PIC2_YEAST (Mitochondrial phosphate carrier protein 2 OS=Saccharomyces cerevisiae GN=PIC2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.960e-18
Identity = 48/100 (48.00%), Postives = 67/100 (67.00%), Query Frame = -3
Query:  505 VPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAV------KKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 786
            +P  K++ +   Q+ +SF GGY+AG+ CA VSHPAD +VS +N+ + A    +V      +K+G  GL+  GL +RIVMIGTLT  QW IYD+FK +VGL
Sbjct:  198 LPKKKEEMNALQQISVSFVGGYLAGILCAAVSHPADVMVSKINSERKANESMSVASKRIYQKIGFTGLW-NGLMVRIVMIGTLTSFQWLIYDSFKAYVGL 296          
BLAST of CB293433 vs. ExPASy Swiss-Prot
Match: MCFN_DICDI (Mitochondrial substrate carrier family protein N OS=Dictyostelium discoideum GN=mcfN PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = -3
Query:  505 PKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKG-----ATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 777
            PK+  +   +L +S   G VAG+  AIVS PAD ++S +N  K        +G+ +++LG+ GLF  GLP R  M+GTLT  Q+ IYD  K  +GL
Sbjct:  199 PKESLTDGQKLSVSLGSGIVAGIVAAIVSQPADTILSKINQEKTDGGVVKAIGNIMRRLGVRGLFL-GLPTRCFMVGTLTAGQFFIYDGIKQMLGL 293          
The following BLAST results are available for this feature:
BLAST of CB293433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MPCP_CHOFU4.013e-2661.86Phosphate carrier protein, mitochondrial OS=Choris... [more]
MPCP_BOVIN1.168e-2555.56Phosphate carrier protein, mitochondrial OS=Bos ta... [more]
MPCP_PONAB5.795e-2555.56Phosphate carrier protein, mitochondrial OS=Pongo ... [more]
MPCP_HUMAN5.795e-2555.56Phosphate carrier protein, mitochondrial OS=Homo s... [more]
MPCP_RAT3.756e-2453.54Phosphate carrier protein, mitochondrial OS=Rattus... [more]
MPCP_MOUSE3.756e-2453.54Phosphate carrier protein, mitochondrial OS=Mus mu... [more]
MPCP_CAEEL1.093e-2355.56Phosphate carrier protein, mitochondrial OS=Caenor... [more]
MPCP_SCHPO3.887e-2157.29Probable mitochondrial phosphate carrier protein O... [more]
PIC2_YEAST8.960e-1848.00Mitochondrial phosphate carrier protein 2 OS=Sacch... [more]
MCFN_DICDI1.933e-1241.67Mitochondrial substrate carrier family protein N O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ad08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ad08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293433 ID=CB293433; Name=CB293433; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTTTTTTTTTTCTCAAGAAAATATTTCCCAATTTTGGCAGGAAAG
AAAAGTTTCAAAGGTACTCGCAACACAATAAACAGCAGTAATGATGATCT
AATAATCGTACACTCCACGCATTTGCGAAGAGAAATTAGGTACTCTCCCC
TTGCACATTATTTTGTCACCTATTCATGGGGAGGATTGCGAGCTGGATAT
CAAAGTGAAATTTCATGTATAATCTAACTACAAAAGTTTTCTGATATTTG
GATGAAAACAAAACCATCCTCAGCAAAAGCAAATCTTAAGCTCGAACAAA
TAGTTCTCAATTATAAAGAATACTCTGACTTGAGACACTCAAGCGCCTTC
AATTTTGTCACCTATGTTTATTAATCCCTATCAAGAAGTTCTCCTGGAAT
CCACAAAACCCAAAATAAAACAATTCTATTTGGTTGACCTACACCTTTGC
AAGCTCAGCAGCAGCAGGGGCAGGAGCAACAGGAGCAACACCACCAGTGG
TTGGCAGTCCCACAAAAACTTTGAATGCATCATAGATTCCCCATTGAGCT
CCAGTGAGTGTTCCAATCATGACAATACGGAGAGGAAGCCCACGGGTAAA
CAGACCCCACAAACCTAGCTTCTTCACAGCATCACCAACAGTTGCTCCTT
TGGCATTGTTAAGGAAAGAGACAAGATTGTCAGCAGGATGCGACACAATA
GCACAGAAAACACCAGCCACATAACCACCAGCAAAACTAATTCCAAGCTG
CAGAGGTTTGCTGCACTGGTCCTTTGGTGTGGGAACTGCATGCTTGTAGA
TCA
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