CB293442

Overview
NameCB293442
Unique NameCB293442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293442_ssr138 microsatellite CB293442_ssr138:138..157. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig310 contig Csv1_Contig310:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH2_ARATH (Probable inosine-5'-monophosphate dehydrogenase OS=Arabidopsis thaliana GN=At1g16350 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.402e-79
Identity = 150/163 (92.02%), Postives = 156/163 (95.71%), Query Frame = -3 
Query:  358 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 846
            VS++AAQ GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAY Y+NGRRVKKYRGMGSLEAMTKGSDQRYLGD AKLKIAQGVVGAVADKGSVLKFIPYTM AVKQGFQDLGASSLQSAH+LLR  TLRLE RTGAAQ+EGG+HGLVSYEKKSF
Sbjct:  340 VSTLAAQHGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYEYRNGRRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIAQGVVGAVADKGSVLKFIPYTMHAVKQGFQDLGASSLQSAHELLRDNTLRLEARTGAAQIEGGIHGLVSYEKKSF 502
[Close]
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH1_ARATH (Inosine-5'-monophosphate dehydrogenase OS=Arabidopsis thaliana GN=IMPDH PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.184e-77
Identity = 148/163 (90.80%), Postives = 152/163 (93.25%), Query Frame = -3 
Query:  358 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 846
            V SIAAQSG+PVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPG Y Y NG+R+KKYRGMGSLEAMTKGSDQRYLGD+ KLKIAQGVVGAVADKGSVLK IPYTM AVKQGFQDLGASSLQSAH LLRS  LRLE RTGAAQVEGGVHGLVSYEKKSF
Sbjct:  341 VCSIAAQSGIPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGGYEYTNGKRIKKYRGMGSLEAMTKGSDQRYLGDQTKLKIAQGVVGAVADKGSVLKLIPYTMHAVKQGFQDLGASSLQSAHGLLRSNILRLEARTGAAQVEGGVHGLVSYEKKSF 503
[Close]
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_DICDI (Inosine-5'-monophosphate dehydrogenase OS=Dictyostelium discoideum GN=impdh PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.669e-49
Identity = 95/156 (60.90%), Postives = 117/156 (75.00%), Query Frame = -3 
Query:  367 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEK 834
            ++Q  VP+IADGGI   GHI+K L LGAS+VMMGS LAG+ EAPG Y Y++G R+KKYRGMGSLEAM KG DQRY  +  K+K+AQGV G+V DKGSV KF+PY +Q +K G QDLG +S+ +  + +    +R EVRT AAQVEG VH L SYEK
Sbjct:  357 SSQYNVPIIADGGIRTIGHIIKGLSLGASSVMMGSMLAGTEEAPGDYFYKDGMRLKKYRGMGSLEAMVKGGDQRYFSETDKIKVAQGVSGSVVDKGSVKKFVPYLIQGIKHGLQDLGCNSVTNLRESVYGGKVRFEVRTAAAQVEGSVHSLFSYEK 512
[Close]
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH2_MOUSE (Inosine-5'-monophosphate dehydrogenase 2 OS=Mus musculus GN=Impdh2 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.857e-47
Identity = 97/165 (58.79%), Postives = 117/165 (70.91%), Query Frame = -3 
Query:  358 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 846
            VS  A + GVPVIADGGI N GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K   S  RY  +  K+K+AQGV GAV DKGS+ KF+PY +  ++   QD+GA SL     ++ S  L+ E RT +AQVEGGVH L SYEK+ F
Sbjct:  350 VSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 514
[Close]
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH2_HUMAN (Inosine-5'-monophosphate dehydrogenase 2 OS=Homo sapiens GN=IMPDH2 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.857e-47
Identity = 97/165 (58.79%), Postives = 117/165 (70.91%), Query Frame = -3 
Query:  358 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 846
            VS  A + GVPVIADGGI N GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K   S  RY  +  K+K+AQGV GAV DKGS+ KF+PY +  ++   QD+GA SL     ++ S  L+ E RT +AQVEGGVH L SYEK+ F
Sbjct:  350 VSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 514
[Close]
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH2_CRIGR (Inosine-5'-monophosphate dehydrogenase 2 OS=Cricetulus griseus GN=IMPDH2 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.857e-47
Identity = 97/165 (58.79%), Postives = 117/165 (70.91%), Query Frame = -3 
Query:  358 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 846
            VS  A + GVPVIADGGI N GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K   S  RY  +  K+K+AQGV GAV DKGS+ KF+PY +  ++   QD+GA SL     ++ S  L+ E RT +AQVEGGVH L SYEK+ F
Sbjct:  350 VSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 514
[Close]
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH2_BOVIN (Inosine-5'-monophosphate dehydrogenase 2 OS=Bos taurus GN=IMPDH2 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.857e-47
Identity = 97/165 (58.79%), Postives = 117/165 (70.91%), Query Frame = -3 
Query:  358 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 846
            VS  A + GVPVIADGGI N GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K   S  RY  +  K+K+AQGV GAV DKGS+ KF+PY +  ++   QD+GA SL     ++ S  L+ E RT +AQVEGGVH L SYEK+ F
Sbjct:  350 VSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 514
[Close]
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH1_HUMAN (Inosine-5'-monophosphate dehydrogenase 1 OS=Homo sapiens GN=IMPDH1 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.907e-46
Identity = 93/165 (56.36%), Postives = 120/165 (72.73%), Query Frame = -3 
Query:  358 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 846
            V+  A + GVP+IADGGI   GH+VKAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K   S +RY  +  K+KIAQGV G++ DKGS+ KF+PY +  ++ G QD+GA SL     ++ S  L+ E RT +AQ+EGGVHGL SYEK+ +
Sbjct:  350 VAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
[Close]
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH1_MOUSE (Inosine-5'-monophosphate dehydrogenase 1 OS=Mus musculus GN=Impdh1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.958e-46
Identity = 93/165 (56.36%), Postives = 120/165 (72.73%), Query Frame = -3 
Query:  358 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 846
            V+  A + GVPVIADGGI   GH+VKAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRG+GSL+AM K   S +RY  +  K+KIAQGV G++ DKGS+ KF+PY +  ++ G QD+GA SL     ++ S  L+ E RT +AQ+EGGVHGL SYEK+ +
Sbjct:  350 VAEYARRFGVPVIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGIGSLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGAQSLSVLRSMMYSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
[Close]
BLAST of CB293442 vs. ExPASy Swiss-Prot
Match: IMDH_DROME (Inosine-5'-monophosphate dehydrogenase OS=Drosophila melanogaster GN=ras PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.553e-44
Identity = 91/169 (53.85%), Postives = 120/169 (71.01%), Query Frame = -3 
Query:  358 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGS------DQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 846
            VS+ A Q GVPVIADGGI + GHIVKA+ LGAS VMMGS LAG++EAPG Y + +G R+KKYRGMGSLEAM +G        + Y  +  K+K+AQGV G++ DKGSVL+++PY    ++   QD+GA+S+    D++ +  LR   RT +AQ+EG VHGL SYEK+ F
Sbjct:  369 VSTYARQFGVPVIADGGIQSIGHIVKAIALGASAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMERGDAKGAAMSRYYHNEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSCQDIGANSINKLRDMIYNGQLRFMKRTHSAQLEGNVHGLFSYEKRLF 537
The following BLAST results are available for this feature:
BLAST of CB293442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
IMDH2_ARATH3.402e-7992.02Probable inosine-5'-monophosphate dehydrogenase OS... [more]
IMDH1_ARATH3.184e-7790.80Inosine-5'-monophosphate dehydrogenase OS=Arabidop... [more]
IMDH_DICDI3.669e-4960.90Inosine-5'-monophosphate dehydrogenase OS=Dictyost... [more]
IMDH2_MOUSE5.857e-4758.79Inosine-5'-monophosphate dehydrogenase 2 OS=Mus mu... [more]
IMDH2_HUMAN5.857e-4758.79Inosine-5'-monophosphate dehydrogenase 2 OS=Homo s... [more]
IMDH2_CRIGR5.857e-4758.79Inosine-5'-monophosphate dehydrogenase 2 OS=Cricet... [more]
IMDH2_BOVIN5.857e-4758.79Inosine-5'-monophosphate dehydrogenase 2 OS=Bos ta... [more]
IMDH1_HUMAN2.907e-4656.36Inosine-5'-monophosphate dehydrogenase 1 OS=Homo s... [more]
IMDH1_MOUSE4.958e-4656.36Inosine-5'-monophosphate dehydrogenase 1 OS=Mus mu... [more]
IMDH_DROME3.553e-4453.85Inosine-5'-monophosphate dehydrogenase OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ae01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ae01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293442 ID=CB293442; Name=CB293442; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTTTTTAAAGTCAAAAACTCTTTATAGCAGCTCCCTAAAAAGCGT
TCCAAATTGATTCAGTGTTGTTTCACAAACATTGCGTAAAATTACCGTCT
TATTTTTCTGATGTATTTAAAATAAAACCGTTACATTATAAAATAAAATA
AAATAAAATAAGATTCTAATAATTTAAAGATGAAAACGCCGGCAACAAGT
AAGACGTGCTTGTGGGTGACTCTCTTGCAAGAGATGCAGATTGGTATACT
CAATCTTTTAGTAGATTCTGTTTACGTGACTGTTATTCATGCTAACGTAG
AACCAGGCAATAAGCAGCAGTAGCAGGAACCAAGTACTCGATCATTTTGA
AGTTTCAGAAGGATTTCTTTTCATAAGATACCAGACCATGTACTCCACCT
TCGACTTGTGCGGCTCCCGTGCGGACCTCCAGCCTTAAAGTTCTTGATCT
TAACAGGTCATGAGCGGACTGCAGGGAAGAAGCTCCAAGATCCTGGAAAC
CTTGCTTCACAGCTTGCATTGTGTATGGTATGAACTTTAAGACCGAACCT
TTATCTGCAACGGCTCCAACCACACCCTGTGCGATCTTTAATTTAGCTTT
ATCGCCTAAGTATCTTTGGTCACTTCCTTTAGTCATTGCTTCTAGAGAGC
CCATGCCTCGATATTTTTTGACCCGACGACCATTCTGATAGACGTAAGCT
CCGGGAGCTTCTGTGCTTCCAGCCAAGAAGCTTCCCATCATTACTGTAGA
TGCCCCAAGAACCAAAGCCTTAACAATGTGTCCAGAGTTTGAAATGCCAC
CATCCGCAATGACAGGTACACCACTTTGTGCAGCAATAGATGAAACCT
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